View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9775_low_8 (Length: 340)
Name: NF9775_low_8
Description: NF9775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9775_low_8 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 340
Target Start/End: Original strand, 9526375 - 9526698
Alignment:
| Q |
17 |
actagcatgatcacaattgagttatctgcatgtgctctaagttcctcaacccatttagcaacatgatcaaatgattgtcttttggttatgtcatatacta |
116 |
Q |
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| T |
9526375 |
actagcatgatcacaattgagttatctgcatgtgctctaagttcctcaacccatttagcaacatgatcaaaagattgccttttggttatgtcatatacta |
9526474 |
T |
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| Q |
117 |
gcatggctcctaatgcacctctatagtatgcacttgtaacagccctgtacctatatcagcaacaaaatttacatgtatatctaatatgtcaaaagaattt |
216 |
Q |
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| T |
9526475 |
gcattgctcctaatgcacctctatagtatgcacttgttacagctctgtacctatatcaacaacataatttacatgtatatatcatatgtcaaaagaattt |
9526574 |
T |
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| Q |
217 |
atctggagtctacacttaaatgatcaggggttattttttgatttagccggggcagattccgtatacaactacagagactaattctacgatataactgata |
316 |
Q |
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| T |
9526575 |
atctgcagtatacacataaatgatcaggggttattttttgatttaaccggggcagattccgtatacaactacagagactaattctacgatataactgata |
9526674 |
T |
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| Q |
317 |
tttatttaagatgccgatctctcc |
340 |
Q |
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| T |
9526675 |
tttatttaagatgccgatctctcc |
9526698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 48932325 - 48932172
Alignment:
| Q |
19 |
tagcatgatcacaattgagttatctgcatgtgctctaagttcctcaacccatttagcaacatgatcaaatgattgtcttttggttatgtcatatactagc |
118 |
Q |
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| T |
48932325 |
tagcatgatcacgatggagttgtcggcgtgtgaccgtagttcctcaatccatctagctacatgatcaaacgtttgtcttttagttatgtcatacaccagc |
48932226 |
T |
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| Q |
119 |
atggctcctaatgcacctctatagtatgcacttgtaacagccctgtacctatat |
172 |
Q |
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| T |
48932225 |
atggcccctaatgctcctctgtagtatgcacttgtaaccgctctgtacctatat |
48932172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 14479 - 14388
Alignment:
| Q |
80 |
tgatcaaatgattgtcttttggttatgtcatatactagcatggctcctaatgcacctctatagtatgcacttgtaacagccctgtacctata |
171 |
Q |
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| T |
14479 |
tgatcgaatgattgacgttttgtcatgtcgtaaactaacattgccccaactgcacctcgatagtatgcactagtaactgccctgtacctata |
14388 |
T |
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