View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9776_high_1 (Length: 365)
Name: NF9776_high_1
Description: NF9776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9776_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 38689992 - 38690241
Alignment:
| Q |
15 |
ttgtttttctctatcttttacacatgtttgttttgtggaacttatacatacatatatttt-atgggaaaagggggttaaacctcccccnnnnnnnnnnn- |
112 |
Q |
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| T |
38689992 |
ttgtttttctctatcttttacacatgtttgtttttcggaacttatacatacatatttttttatgggaaaaggaggttaaacctccccaaaaaaaaaaaaa |
38690091 |
T |
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| Q |
113 |
----gagtaaaattaatctcccctctcgaaaacaaggtccctgacctaaaatagctaaaaaga---caaaaaattggtatagaattaaaaccacgtttcc |
205 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| |
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| T |
38690092 |
aaaagagtaaaattaatctcccctc--gaaaacaaggtccctgacctaaaatagctaaaaaaaaaacaaaaaattggtatagaattaagaccacgtttcc |
38690189 |
T |
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| Q |
206 |
attagtgattgttgtgatt--tgtgatttccattagtaatttaacaagcgtc |
255 |
Q |
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| T |
38690190 |
attagtgattgttgtgatttgtgtgatttccattagtaatttaacaagcgtc |
38690241 |
T |
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