View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9776_high_3 (Length: 234)
Name: NF9776_high_3
Description: NF9776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9776_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 46909491 - 46909695
Alignment:
| Q |
15 |
cacagaagtaaaataatactaactgataggctaaacaactaacttaactctcattagagtaacaacagataagtaaaaactaaacatgactaggtaacaa |
114 |
Q |
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| T |
46909491 |
cacagaagtaaaataatactaactgataggctaaacaactaacttaactctcattagagtaacaacagataagtaaaaactaaacatgactaggtaacaa |
46909590 |
T |
|
| Q |
115 |
ataaaatcaatccttaaatctgcaacactttcatatagaataaccatagacaggctacaccataaagccagctgcagaggatccgaatttgaggatggat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46909591 |
ataaaatcaatccttaaatctgcaacactttcatatagaataaccatagacaggctacaccataaagccagctgcagaggatccgaatttgaggatggat |
46909690 |
T |
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| Q |
215 |
agatg |
219 |
Q |
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||||| |
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| T |
46909691 |
agatg |
46909695 |
T |
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