View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9776_low_1 (Length: 435)
Name: NF9776_low_1
Description: NF9776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9776_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 1034742 - 1035166
Alignment:
| Q |
1 |
tcattttgcaaagaaagttctttctttcttgcccttataacattctcagcaaattcatcaactttttgtatggatttcttaagctttctttccataccta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1034742 |
tcattttgcaaagaaagttctttctttcttgcccttataacattctcagcaaattcatcaactttttgtatggatttcttaagctttctttccataccta |
1034841 |
T |
|
| Q |
101 |
agttaagaaacctcatagccttccatacacaaatcggcacgacaaatcgaaacaaaatagcttctgttgcatcctcaaaagctgctgcaaagggaatttc |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1034842 |
agttaagaaacctcatagctttccatacacaaatcggcacgacaaatcgaaacaaaatagcttctgttgcatcctcaaaagctcctgcaaagggaatttc |
1034941 |
T |
|
| Q |
201 |
aggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagcctcagcaaaatatcttgaagatctatggca |
300 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1034942 |
aggcaaatgaggttgtaagcaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcagcaaaatatcttgaagatctatggca |
1035041 |
T |
|
| Q |
301 |
acatttttcttcaatgataattctaagactggtatgagcctattgttcacaagctcaaaaattgactcaattgttaactttctaaaatttgtcgaatgaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1035042 |
acatttttcttcaatgataattctaagactggtatgagcctattgttcacaagctcaaaaattgactcatttgttaactttctaaaatttgtcgaatgaa |
1035141 |
T |
|
| Q |
401 |
actcgatactagctattttcctttg |
425 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
1035142 |
actcgatactagctattttcctttg |
1035166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 13897685 - 13898109
Alignment:
| Q |
1 |
tcattttgcaaagaaagttctttctttcttgcccttataacattctcagcaaattcatcaactttttgtatggatttcttaagctttctttccataccta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
13897685 |
tcattttgcaaagaaagttctttctttcttgcccttataacattctcagcaaattcatcaactttttgtattgatttcttgagctttctttccataccta |
13897784 |
T |
|
| Q |
101 |
agttaagaaacctcatagccttccatacacaaatcggcacgacaaatcgaaacaaaatagcttctgttgcatcctcaaaagctgctgcaaagggaatttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13897785 |
agttaagaaacctcatagccttccatacacaaaccggcatgacaaatcgaaacaaagtagcttctgttgcatcctcaaaagctgcagcaaagggaatttc |
13897884 |
T |
|
| Q |
201 |
aggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagcctcagcaaaatatcttgaagatctatggca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||| |
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|
| T |
13897885 |
aggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatctattgca |
13897984 |
T |
|
| Q |
301 |
acatttttcttcaatgataattctaagactggtatgagcctattgttcacaagctcaaaaattgactcaattgttaactttctaaaatttgtcgaatgaa |
400 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
13897985 |
acatttttcttcaatgatgattctaagacaggtatgagcctattgttcacaagctcaaaaattgacttaattgttaacttcctaaaatttgtcgaatgaa |
13898084 |
T |
|
| Q |
401 |
actcgatactagctattttcctttg |
425 |
Q |
| |
|
|||||||||| |||||||||||||| |
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|
| T |
13898085 |
actcgatactcgctattttcctttg |
13898109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 425
Target Start/End: Complemental strand, 13887511 - 13887095
Alignment:
| Q |
9 |
caaagaaagttctttctttcttgcccttataacattctcagcaaattcatcaactttttgtatggatttcttaagctttctttccatacctaagttaaga |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | |||||| |||||||||||||||||| |
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|
| T |
13887511 |
caaagaaagttctttctttcttgcccttataacattctcagcaaattcatcaactttttgtattgattccttcaactttctctccatacctaagttaaga |
13887412 |
T |
|
| Q |
109 |
aacctcatagccttccatacacaaatcggcacgacaaatcgaaacaaaatagcttctgttgcatcctcaaaagctgctgcaaagggaatttcaggcaaat |
208 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||| |||| | ||||| |||||||| ||||||||| |||||| || |||||||| |||| |
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| T |
13887411 |
aacctcatagccttccatacacaaactggcgcgacaaatcgaagcaaagttgcttcggttgcatcttcaaaagctcttgcaaaaggtatttcaggtaaat |
13887312 |
T |
|
| Q |
209 |
gaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagcctcagcaaaatatcttgaagatctatggcaacattttt |
308 |
Q |
| |
|
|| |||| |||||| |||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||| ||| ||| |
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|
| T |
13887311 |
gaagttgcaaacaagaaggatcaacatcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatcgatggaaaccgattt |
13887212 |
T |
|
| Q |
309 |
cttcaatgataattctaagactggtatgagcctattgttcacaagctcaaaaattgactcaattgttaactttctaaaatttgtcgaatgaaactcgata |
408 |
Q |
| |
|
|||||| ||| | |||||||| ||||||||||||||||||||||||||||| | ||| ||| ||||||| || ||||| ||||| ||||||||||||||| |
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| T |
13887211 |
cttcaacgatgaatctaagacaggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaatttcctaaactttgttgaatgaaactcgata |
13887112 |
T |
|
| Q |
409 |
ctagctattttcctttg |
425 |
Q |
| |
|
|| ||| |||||||||| |
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| T |
13887111 |
ctcgctgttttcctttg |
13887095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 3 - 135
Target Start/End: Original strand, 7295719 - 7295855
Alignment:
| Q |
3 |
attttgcaaagaaagttctttctttcttgcccttataacattctcagcaaattcatcaactttttgtatggatttctt--aagctttctttccataccta |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||| | |||||| |||||||||| |||||||| |
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| T |
7295719 |
attttgcaaagaaagttccttctttcttgcccttataatattctcagcaaattcatcagctttttgtattgttttcttaaaagctttcttgtcataccta |
7295818 |
T |
|
| Q |
101 |
agttaag--aaacctcatagccttccatacacaaatc |
135 |
Q |
| |
|
||||||| |||| ||||||| ||||| ||||||||| |
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|
| T |
7295819 |
agttaagaaaaacgtcatagctttccacacacaaatc |
7295855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 257
Target Start/End: Original strand, 7295875 - 7295946
Alignment:
| Q |
186 |
tgcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacatt |
257 |
Q |
| |
|
|||||| || |||||| |||||| |||||| |||||||||||||||||||||||| |||||| |||||||| |
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|
| T |
7295875 |
tgcaaatggtatttcaaacaaatgtggttgtgaacaaccaggatcaacaccaaaagatatcatgcaaacatt |
7295946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 28667238 - 28667315
Alignment:
| Q |
217 |
aaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagcctcagcaaaatatcttgaagatct |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| || | | ||| |||||||||||| |
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|
| T |
28667238 |
aaacaaccaggatcaacaccaaaagctatcatacaaacattgtcaaaagttagtcttaaaagaatgtcttgaagatct |
28667315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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