View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9776_low_11 (Length: 227)
Name: NF9776_low_11
Description: NF9776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9776_low_11 |
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| [»] scaffold0405 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 9695791 - 9695742
Alignment:
| Q |
171 |
cttcagacttggacttctcagatccttcttcctccgaagcattcttctca |
220 |
Q |
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| T |
9695791 |
cttcagacttggacttctcagatccttcttcctccgaagcattcttctca |
9695742 |
T |
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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 9695961 - 9695905
Alignment:
| Q |
1 |
gttactcctacgcttcttccttcagcaccaccaactttactcctcatcctcctcctg |
57 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9695961 |
gttaatcctacgcttcttccttcagcaccaccaaccttactcctcatcctcctcctg |
9695905 |
T |
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Target: scaffold0405 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 14700 - 14748
Alignment:
| Q |
172 |
ttcagacttggacttctcagatccttcttcctccgaagcattcttctca |
220 |
Q |
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||||||||| ||||| | |||||||||||| |||||||||||||||||| |
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| T |
14700 |
ttcagacttagacttatgagatccttcttcttccgaagcattcttctca |
14748 |
T |
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