View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9776_low_3 (Length: 321)
Name: NF9776_low_3
Description: NF9776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9776_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 14864771 - 14865067
Alignment:
| Q |
17 |
aaaataccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatggattcgattttgcgggaaagaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14864771 |
aaaataccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagctgccaaatccatggattcgattttgcgggaaagaa |
14864870 |
T |
|
| Q |
117 |
gttccacaataaaagaatcctgaagagccttctcaaagaaagtctgcaaatttgcctgcctctgctccatgccatccaatcgccgttgaaaatcttccag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14864871 |
gttccacaataaaagaatcctgaagagccttgtcaaagaaagtctgcaaatttgcctgcctctgctccatgccatccaatcgccgctgaaaatcttccag |
14864970 |
T |
|
| Q |
217 |
ctgaagcttttccgtctcaagataatcataacttaagagtttggattgaagggcatttttctcatgaaacagcatctctatttcttgctcctatgct |
313 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
14864971 |
ctgaagcttttccgtctcaagataatcgtaacttaagagtttggattgaagggcatttttctcgagagacagcatctctatttcttgctccaatgct |
14865067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 21 - 313
Target Start/End: Original strand, 15322737 - 15323029
Alignment:
| Q |
21 |
taccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatggattcgattttgcgggaaagaagttc |
120 |
Q |
| |
|
|||||||| ||||| |||| || ||||||||||||||||||||||||||||||||| || |||||||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
15322737 |
taccttcggcaacaagctgcatctgatcaacctgagacaatcgccttttcttattataagctgccaaatccttggattcgaatttgccggaaagaagttc |
15322836 |
T |
|
| Q |
121 |
cacaataaaagaatcctgaagagccttctcaaagaaagtctgcaaatttgcctgcctctgctccatgccatccaatcgccgttgaaaatcttccagctga |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
15322837 |
aacaataaaagaatcctgaagagccttctcaaagaagttctgcaaatttgtctgcctcttctccatgccatccaatcgacgttgaaaatcttccagctta |
15322936 |
T |
|
| Q |
221 |
agcttttccgtctcaagataatcataacttaagagtttggattgaagggcatttttctcatgaaacagcatctctatttcttgctcctatgct |
313 |
Q |
| |
|
|||||||| |||||||||||| || ||| | ||||||||||||| |||||||||||| ||| ||| | ||||||||||||||||| ||||| |
|
|
| T |
15322937 |
agcttttctttctcaagataattgtagcttgatagtttggattgaatggcatttttctcgtgagacaacttctctatttcttgctccaatgct |
15323029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 21 - 279
Target Start/End: Complemental strand, 15353883 - 15353625
Alignment:
| Q |
21 |
taccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatggattcgattttgcgggaaagaagttc |
120 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| || | |||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
15353883 |
taccttcggcaacaggctgcatgtgatcaacctgagacaatcgccttttcttattataagcttccaaatccatggattcgaatttgccggaaagaagttc |
15353784 |
T |
|
| Q |
121 |
cacaataaaagaatcctgaagagccttctcaaagaaagtctgcaaatttgcctgcctctgctccatgccatccaatcgccgttgaaaatcttccagctga |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||| | || |||||||||||||||||| |
|
|
| T |
15353783 |
aacaataaaagaatcctgaagagccttctcaaagaagttctgcaaatttgtctgcctcttctccatgccatccaattgacgatgaaaatcttccagctga |
15353684 |
T |
|
| Q |
221 |
agcttttccgtctcaagataatcataacttaagagtttggattgaagggcatttttctc |
279 |
Q |
| |
|
|||||||| |||||||||||| || ||| | |||||||||||||||||||||||||| |
|
|
| T |
15353683 |
agcttttctttctcaagataattgtagcttgatagtttggattgaagggcatttttctc |
15353625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 34 - 313
Target Start/End: Complemental strand, 15374071 - 15373792
Alignment:
| Q |
34 |
aggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatggattcgattttgcgggaaagaagttccacaataaaagaa |
133 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||| | |||||||||||| |||||||||||| |
|
|
| T |
15374071 |
aggctgcatgtgatcaacctgagacaatcgccttttcttattataagctgccaaatccatggattcgaattttccggaaagaagttcaacaataaaagaa |
15373972 |
T |
|
| Q |
134 |
tcctgaagagccttctcaaagaaagtctgcaaatttgcctgcctctgctccatgccatccaatcgccgttgaaaatcttccagctgaagcttttccgtct |
233 |
Q |
| |
|
|| ||||||| |||||||||||| |||||||||||| |||||||| ||||||||||| ||||| |||||||||| ||||||||||||||||||| ||| |
|
|
| T |
15373971 |
tcttgaagaggcttctcaaagaagttctgcaaatttgtctgcctcttctccatgccattcaatcaccgttgaaaaccttccagctgaagcttttctttct |
15373872 |
T |
|
| Q |
234 |
caagataatcataacttaagagtttggattgaagggcatttttctcatgaaacagcatctctatttcttgctcctatgct |
313 |
Q |
| |
|
||||||||| || ||||| |||||||||| |||||||||||||| ||| | ||| ||||||||||||||||| ||||| |
|
|
| T |
15373871 |
caagataattgtagcttaatagtttggattaaagggcatttttctggtgagatagcttctctatttcttgctccaatgct |
15373792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 21 - 313
Target Start/End: Original strand, 15352894 - 15353186
Alignment:
| Q |
21 |
taccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatggattcgattttgcgggaaagaagttc |
120 |
Q |
| |
|
|||||||| ||||| |||| || ||||||| | ||||||||||||||||||||||| || ||||||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
15352894 |
taccttcggcaacaagctgcatttgatcaacataagacaatcgccttttcttattataagcagccaaatccttggattcgaatttgccggaaagaagttc |
15352993 |
T |
|
| Q |
121 |
cacaataaaagaatcctgaagagccttctcaaagaaagtctgcaaatttgcctgcctctgctccatgccatccaatcgccgttgaaaatcttccagctga |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||| |||| ||||||||||||| | |
|
|
| T |
15352994 |
aacaataaaagaatcctgaagagccttctcaaagaagttctgcaaatttgtctgcctcttctccatgccatccaatcgacgttaaaaatcttccagcata |
15353093 |
T |
|
| Q |
221 |
agcttttccgtctcaagataatcataacttaagagtttggattgaagggcatttttctcatgaaacagcatctctatttcttgctcctatgct |
313 |
Q |
| |
|
|||||||| |||||||||||| || ||| | |||||||||||||||||||||||||| ||| ||||| |||||||||||| |||| ||||| |
|
|
| T |
15353094 |
agcttttctttctcaagataattgtagcttcatagtttggattgaagggcatttttctcgtgagacagcttctctatttctttctccaatgct |
15353186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 21 - 279
Target Start/End: Original strand, 15373323 - 15373581
Alignment:
| Q |
21 |
taccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatggattcgattttgcgggaaagaagttc |
120 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || | |||||||||||| |
|
|
| T |
15373323 |
taccttcggcaacaggctgcatgtgatcaacctgagacaatcgccttttcttattataagctgccaaatccatggattcgaattatccggaaagaagttc |
15373422 |
T |
|
| Q |
121 |
cacaataaaagaatcctgaagagccttctcaaagaaagtctgcaaatttgcctgcctctgctccatgccatccaatcgccgttgaaaatcttccagctga |
220 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||| || ||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15373423 |
aacaataaaagaatcctgaagagccttttcaaagaagttctgcaaatttgtctacctcttctccatgccatccaatcgccgttaaaaatcttccagctga |
15373522 |
T |
|
| Q |
221 |
agcttttccgtctcaagataatcataacttaagagtttggattgaagggcatttttctc |
279 |
Q |
| |
|
||||| || ||||||||||| || ||| | |||||||||||||||||||||||||| |
|
|
| T |
15373523 |
agcttatctttctcaagataactgtagcttgatagtttggattgaagggcatttttctc |
15373581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 21 - 279
Target Start/End: Complemental strand, 15323745 - 15323487
Alignment:
| Q |
21 |
taccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatggattcgattttgcgggaaagaagttc |
120 |
Q |
| |
|
|||||||| ||||||| || ||| ||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| |||| |||||||||||| |
|
|
| T |
15323745 |
taccttcggcaacaggttgcatgtgatcaacctgagacaatcgccttttcttattataagctgccaaatccatggatccgaatttgtcggaaagaagttc |
15323646 |
T |
|
| Q |
121 |
cacaataaaagaatcctgaagagccttctcaaagaaagtctgcaaatttgcctgcctctgctccatgccatccaatcgccgttgaaaatcttccagctga |
220 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
15323645 |
aacaataaaagaatcttgaagaaccttctcaaagaagttctgcaaatttgtgtgcctcttctccatgccatccaatcgctgttgaaaaacttcctgctga |
15323546 |
T |
|
| Q |
221 |
agcttttccgtctcaagataatcataacttaagagtttggattgaagggcatttttctc |
279 |
Q |
| |
|
|||||| |||||||||||| || ||| | |||||||||||||||||||||||||| |
|
|
| T |
15323545 |
agctttgttttctcaagataattgtagcttgatagtttggattgaagggcatttttctc |
15323487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 21 - 313
Target Start/End: Complemental strand, 35146334 - 35146042
Alignment:
| Q |
21 |
taccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatggattcgattttgcgggaaagaagttc |
120 |
Q |
| |
|
|||||||| |||||||||| | |||||||||||| |||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
35146334 |
taccttcggcaacaggctgcacctgatcaacctgaggcaatcgccttttcttattataagctgccaaatccatggattcaattttgcgggaaagaagttc |
35146235 |
T |
|
| Q |
121 |
cacaataaaagaatcctgaagagccttctcaaagaaagtctgcaaatttgcctgcctctgctccatgccatccaatcgccgttgaaaatcttccagctga |
220 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35146234 |
aacaataaaagaatcttgaagagccttctcaaagaagttctgcaaatttgtctgcctcttctccatgccatccaatcgccgctgaaaatcttccagctga |
35146135 |
T |
|
| Q |
221 |
agcttttccgtctcaagataatcataacttaagagtttggattgaagggcatttttctcatgaaacagcatctctatttcttgctcctatgct |
313 |
Q |
| |
|
|||||||| || || ||||||| || ||||||||||||| |||||| ||||||||||| || ||| | ||||||||||||||||| ||||| |
|
|
| T |
35146134 |
agcttttctgtatcgagataattgtagcttaagagtttggtttgaagagcatttttctcgcgagacaacttctctatttcttgctccaatgct |
35146042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University