View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9776_low_5 (Length: 265)
Name: NF9776_low_5
Description: NF9776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9776_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 19644437 - 19644688
Alignment:
| Q |
1 |
aaacacatatattatgttactaaactataatgatagtgaagttaatagagaagtcccttgaaatagtaattagagagtcttacgatgaatgatgaatgaa |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
19644437 |
aaactcatatattatgttactaaactataatgatagtgaagttaatagagaagtcccttgaaatagtaattagagagtcttacgatgaataacgaatgaa |
19644536 |
T |
|
| Q |
101 |
taaa-gatccttaa-caaaatgaaggacaaaaaaccgattcaatgtcttgttacatagatgatgaataaacaaaaattgagaatagtaacgatgagtgtt |
198 |
Q |
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|||| || |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19644537 |
taaaagaaccttaaacaaaatgaaggacaaaaaaccgattcaatgtcttattacatagatgatgaataaacaaaagttgagaatagtaacgatgagtgtt |
19644636 |
T |
|
| Q |
199 |
agaaaacactattgaagatgatgaagaatgcatttagaacaccaaagtgtgt |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19644637 |
agaaaacactattgaagatgatgaagaatgcatttagaacaccaaagtgtgt |
19644688 |
T |
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