View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9776_low_7 (Length: 250)

Name: NF9776_low_7
Description: NF9776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9776_low_7
NF9776_low_7
[»] chr4 (12 HSPs)
chr4 (1-159)||(27967926-27968085)
chr4 (166-243)||(27967431-27967508)
chr4 (64-233)||(35064962-35065130)
chr4 (60-117)||(49138968-49139025)
chr4 (61-117)||(21691353-21691409)
chr4 (57-117)||(50061768-50061828)
chr4 (173-204)||(41370057-41370088)
chr4 (162-236)||(30357508-30357582)
chr4 (60-117)||(54705524-54705581)
chr4 (162-238)||(32818383-32818459)
chr4 (60-120)||(33456269-33456329)
chr4 (69-113)||(46344968-46345012)
[»] chr5 (6 HSPs)
chr5 (162-245)||(42858104-42858187)
chr5 (164-237)||(14299328-14299401)
chr5 (60-115)||(18851217-18851272)
chr5 (164-238)||(6951318-6951392)
chr5 (60-117)||(38845644-38845701)
chr5 (88-159)||(43268422-43268491)
[»] chr1 (18 HSPs)
chr1 (175-237)||(34721854-34721916)
chr1 (172-245)||(7524119-7524192)
chr1 (162-245)||(7790648-7790731)
chr1 (173-243)||(1514350-1514420)
chr1 (173-238)||(11049257-11049322)
chr1 (164-236)||(3416078-3416150)
chr1 (57-117)||(36780250-36780310)
chr1 (173-233)||(44801592-44801652)
chr1 (162-238)||(50571280-50571356)
chr1 (176-245)||(30557514-30557581)
chr1 (164-234)||(34387710-34387780)
chr1 (60-117)||(14644592-14644649)
chr1 (60-117)||(15084726-15084783)
chr1 (164-245)||(28083894-28083975)
chr1 (60-117)||(28084021-28084078)
chr1 (164-245)||(38797635-38797716)
chr1 (173-245)||(30850405-30850477)
chr1 (173-233)||(32370049-32370109)
[»] chr3 (5 HSPs)
chr3 (162-232)||(25359593-25359663)
chr3 (178-245)||(32523346-32523413)
chr3 (60-118)||(52363960-52364018)
chr3 (192-245)||(54173321-54173374)
chr3 (174-238)||(47356258-47356322)
[»] chr8 (11 HSPs)
chr8 (176-245)||(26100152-26100221)
chr8 (162-243)||(15677823-15677905)
chr8 (60-117)||(10367896-10367953)
chr8 (173-245)||(32927899-32927971)
chr8 (57-117)||(44141190-44141250)
chr8 (175-238)||(32736471-32736534)
chr8 (164-243)||(38868496-38868575)
chr8 (164-238)||(44141063-44141137)
chr8 (173-238)||(4662916-4662981)
chr8 (192-237)||(38868769-38868814)
chr8 (56-112)||(7533692-7533748)
[»] chr7 (3 HSPs)
chr7 (162-245)||(41386821-41386904)
chr7 (173-245)||(40491585-40491657)
chr7 (53-117)||(45004873-45004937)
[»] chr6 (7 HSPs)
chr6 (60-228)||(5724653-5724820)
chr6 (134-245)||(25195818-25195929)
chr6 (51-117)||(4907902-4907968)
chr6 (162-227)||(957647-957712)
chr6 (60-120)||(1499761-1499821)
chr6 (159-245)||(26280598-26280684)
chr6 (162-238)||(4907959-4908035)
[»] chr2 (8 HSPs)
chr2 (54-117)||(30503098-30503161)
chr2 (173-238)||(31685982-31686047)
chr2 (173-228)||(2002718-2002773)
chr2 (177-238)||(4376019-4376079)
chr2 (60-117)||(33047685-33047742)
chr2 (164-232)||(3352074-3352142)
chr2 (173-245)||(10644610-10644682)
chr2 (158-238)||(45066434-45066514)
[»] scaffold0314 (1 HSPs)
scaffold0314 (61-120)||(17322-17381)
[»] scaffold0168 (1 HSPs)
scaffold0168 (60-117)||(31721-31778)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 27968085 - 27967926
Alignment:
Q  1 ttttatataaacacacctatgttattaacttttatgctggataagcgtctaattaagtatatgtttgattccacttctaaaggggccaaaattgattatg 100  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||     
T  27968085 ttttatataaacacacctatgttattaacttttatgctagatacgcgtctaattaagtatatgtttgattccacttctaaagaggtcaaaattgattata 27967986  T
Q  101 taggtgtagaattgattatg-catgtgtggttggagtagaattgattttgcctcaagaat 159  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  27967985 taggtgtagaattgattatgacatgtatggttggagtagaattgattttgcctcaagaat 27967926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 27967508 - 27967431
Alignment:
Q  166 ttgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcatctca 243  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  27967508 ttgattttacttgaaattaggatttataattttttattcaataattgacttttacgcacaaatttatagttcaactca 27967431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 233
Target Start/End: Original strand, 35064962 - 35065130
Alignment:
Q  64 tttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgattatg-catgtgtggttg-----gagtagaattgattttgcctcaaga 157  Q
    |||| ||||||||||  ||||| |||||||||||||| ||||||||||||||||||| ||| | ||||||     |||||||||||||||||||          
T  35064962 tttggttccacttctcgaggggtcaaaattgattatggaggtgtagaattgattatgacatttttggttgctttcgagtagaattgattttgcc------ 35065055  T
Q  158 atcaagaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttata 233  Q
     |||| ||||||| |||||||||| ||| |||| |   |||| |||| | |||||| |||||||||||||||||||    
T  35065056 -tcaataattgattttacttgaagctagtatttgtgacttttgattctagaattgatttttacacacaaatttata 35065130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 49139025 - 49138968
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    |||||||| |||||||||||||| |||||||||||||| |  ||||||||||||||||    
T  49139025 tatgtttggttccacttctaaagtggccaaaattgattctagaggtgtagaattgatt 49138968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 21691409 - 21691353
Alignment:
Q  61 atgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    ||||||| ||||||||||| |||| ||| |||||||| || ||||||||||||||||    
T  21691409 atgtttggttccacttctagagggaccagaattgattctggaggtgtagaattgatt 21691353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 50061828 - 50061768
Alignment:
Q  57 gtatatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    ||||||||||| ||||||||||| |||  |||||||||||| || |||| |||||||||||    
T  50061828 gtatatgtttggttccacttctagaggaaccaaaattgattctggaggtctagaattgatt 50061768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 204
Target Start/End: Complemental strand, 41370088 - 41370057
Alignment:
Q  173 tacttgaagttaggatttatagttttttattc 204  Q
    ||||||||||||||||||||||||||||||||    
T  41370088 tacttgaagttaggatttatagttttttattc 41370057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 30357508 - 30357582
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagtt 236  Q
    |||||||||  ||||||||| |  ||||| ||| |||| |||  |||||||| ||||||||||||||||||||||    
T  30357508 agaattgattctacttgaagctgtgatttgtagcttttgattatataattgatttttacacacaaatttatagtt 30357582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 54705581 - 54705524
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    |||||||| ||||||||||| ||||||||||||||  |||| |||| || ||||||||    
T  54705581 tatgtttggttccacttctagaggggccaaaattggctatgaaggtatataattgatt 54705524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 32818459 - 32818383
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttca 238  Q
    |||||||||  || |||||| ||| |||| ||| |||| |||| | |||||| |||| |||||||||||||||||||    
T  32818459 agaattgattctatttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaatttatagttca 32818383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 33456269 - 33456329
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgattatg 120  Q
    |||||||| ||||||||||| |||| | | |||||||| || | |||||||||||||||||    
T  33456269 tatgtttggttccacttctagagggactataattgattttgaatgtgtagaattgattatg 33456329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 46345012 - 46344968
Alignment:
Q  69 ttccacttctaaaggggccaaaattgattatgtaggtgtagaatt 113  Q
    ||||||||||| |||| ||||||||||||||| ||||||| ||||    
T  46345012 ttccacttctagagggcccaaaattgattatggaggtgtataatt 46344968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 42858104 - 42858187
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcatctcact 245  Q
    ||||||||| |||||||||||||||||||  || |||| |||| |||||||| ||| |||||||||||||||||||| ||||||    
T  42858104 agaattgattttacttgaagttaggatttggagcttttaattctataattgattttcacacacaaatttatagttcaactcact 42858187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 14299328 - 14299401
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttc 237  Q
    |||||||  |||||||||||||||||| ||||||||||||| | |||||  ||| ||||| |||||||||||||    
T  14299328 aattgattctacttgaagttaggatttgtagttttttattctagaattggttttcacacataaatttatagttc 14299401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 18851272 - 18851217
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattga 115  Q
    ||||||||||||| |||||| |||| ||||||||||||||| || |||||||||||    
T  18851272 tatgtttgattccgcttctagagggaccaaaattgattatggagttgtagaattga 18851217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 6951392 - 6951318
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttca 238  Q
    |||||||  |||||||||||||||||| ||| |||| |||| |||||||| || |||||| ||||||||| ||||    
T  6951392 aattgattctacttgaagttaggatttgtagcttttgattctataattgatttgtacacataaatttataattca 6951318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 38845701 - 38845644
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    |||||||| ||||||||||| || | |||||||||||| || ||||||||||||||||    
T  38845701 tatgtttggttccacttctagagagaccaaaattgattctggaggtgtagaattgatt 38845644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 43268422 - 43268491
Alignment:
Q  88 aaaattgattatgtaggtgtagaattgattatgcatgtgtggttggagtagaattgattttgcctcaagaat 159  Q
    |||||||||| || ||||||| |||||||| || |||| |||| ||  |||||||||||||||||| |||||    
T  43268422 aaaattgattttggaggtgtaaaattgattttgtatgtttggtcgg--tagaattgattttgcctccagaat 43268491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 34721916 - 34721854
Alignment:
Q  175 cttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttc 237  Q
    |||||||||||||||| | ||||||||||| |||||||| ||| |||||||||||||||||||    
T  34721916 cttgaagttaggatttgttgttttttattctataattgattttcacacacaaatttatagttc 34721854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 7524119 - 7524192
Alignment:
Q  172 ttacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcatctcact 245  Q
    ||||||||||||||||||| ||| |||| |||  | |||||| |||||||||||||||||||||||| ||||||    
T  7524119 ttacttgaagttaggatttgtagcttttgattatagaattgatttttacacacaaatttatagttcaactcact 7524192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 7790731 - 7790648
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcatctcact 245  Q
    |||||||||  |||||||||||| ||||| ||| |||  |||| |||||||| |||||||||||||||||| ||||| ||||||    
T  7790731 agaattgattctacttgaagttatgatttgtagatttagattctataattgatttttacacacaaatttattgttcaactcact 7790648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 1514350 - 1514420
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcatctca 243  Q
    ||||||||| |||||||| ||| ||||||||  |||||||| |||||||||||||||||| ||||| ||||    
T  1514350 tacttgaagctaggatttgtagctttttattatataattgatttttacacacaaatttattgttcaactca 1514420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 11049257 - 11049322
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttca 238  Q
    ||||||||| |||||||| ||| |||| |||| | |||||| ||||||||||||||||||||||||    
T  11049257 tacttgaagctaggatttgtagcttttgattctaaaattgatttttacacacaaatttatagttca 11049322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 3416078 - 3416150
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagtt 236  Q
    |||||||  ||||| |||||| ||||| ||||||||||||  | |||||| ||||||||||||||||||||||    
T  3416078 aattgattatacttaaagttaagatttgtagttttttattttagaattgatttttacacacaaatttatagtt 3416150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 36780310 - 36780250
Alignment:
Q  57 gtatatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    ||||||||||||||  |||| || |||| ||| ||||||||||| ||||||||||||||||    
T  36780310 gtatatgtttgattttacttttagagggaccataattgattatggaggtgtagaattgatt 36780250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 44801592 - 44801652
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttata 233  Q
    |||||||||||||||||| ||||||||||||| | |||| | |||||| | ||||||||||    
T  44801592 tacttgaagttaggatttgtagttttttattctaaaattaatttttacgcgcaaatttata 44801652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 50571280 - 50571356
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttca 238  Q
    |||||||||  |||||||||||||||||| ||||||||||||| | || |||  || | ||||||| ||||||||||    
T  50571280 agaattgattctacttgaagttaggatttgtagttttttattctagaactgatgttcagacacaaagttatagttca 50571356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 30557514 - 30557581
Alignment:
Q  176 ttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcatctcact 245  Q
    |||||| |||||||| |||||||| |||| | |||||| |||  ||||||||||||||||||| ||||||    
T  30557514 ttgaagctaggatttgtagtttttgattctagaattgatttt--cacacaaatttatagttcaactcact 30557581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 34387780 - 34387710
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatag 234  Q
    ||||||| |||||||||||| ||| ||  || |||| |||| |||||||| ||| ||||||||||||||||    
T  34387780 aattgattttacttgaagttgggaattgcagcttttgattctataattgattttcacacacaaatttatag 34387710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 14644592 - 14644649
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    |||||||| ||| |||| |||||||| |||||||||||||| || |||| ||||||||    
T  14644592 tatgtttggttcaacttttaaaggggacaaaattgattatggagatgtaaaattgatt 14644649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 15084783 - 15084726
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    |||||||| ||| ||||||| ||||| ||| ||||||| || ||||||||||||||||    
T  15084783 tatgtttggttctacttctagaggggtcaatattgattctgaaggtgtagaattgatt 15084726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 28083975 - 28083894
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcatctcact 245  Q
    |||||||  ||||||||| ||| |||| ||| |||| |||| |||||| | ||||||||||||||||  |||||| ||||||    
T  28083975 aattgattctacttgaagctagaatttgtagcttttgattctataattaatttttacacacaaatttcaagttcagctcact 28083894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 28084078 - 28084021
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    |||||||||||||||||||| ||| ||||||||||| | ||   ||||||||||||||    
T  28084078 tatgtttgattccacttctagaggagccaaaattgactctggtagtgtagaattgatt 28084021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 38797716 - 38797635
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcatctcact 245  Q
    |||||||  |||||||||||| ||||| ||  || | | |||| |||||| ||| |||||||||||||||||||| ||||||    
T  38797716 aattgattatacttgaagttatgatttgtaacttctaaatcaagaattgattttcacacacaaatttatagttcaactcact 38797635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 30850477 - 30850405
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcatctcact 245  Q
    ||||||||  |||||||| |||||||| |||  | |||||| ||| ||| |||||||||||||||| ||||||    
T  30850477 tacttgaaactaggatttgtagtttttaattttagaattgattttaacatacaaatttatagttcaactcact 30850405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 32370109 - 32370049
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttata 233  Q
    ||||||||||||| |||| || |||||||||| | ||||   |||||||||||||||||||    
T  32370109 tacttgaagttagaatttgtaattttttattctagaattattttttacacacaaatttata 32370049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 25359663 - 25359593
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttat 232  Q
    |||||||||  ||||||||||||| |||| ||||||||||||| |||||||| ||| ||||||| ||||||    
T  25359663 agaattgattctacttgaagttagaatttgtagttttttattctataattgattttcacacacatatttat 25359593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 32523413 - 32523346
Alignment:
Q  178 gaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcatctcact 245  Q
    ||||||||||||| ||| |||| |||| | |||||| ||||||||||||||||| |||| | ||||||    
T  32523413 gaagttaggatttgtagcttttgattctaaaattgatttttacacacaaatttagagtttaactcact 32523346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 52363960 - 52364018
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatta 118  Q
    |||||||| |||||||| || |||| ||||||||||||||  ||||||| |||||||||    
T  52363960 tatgtttggttccacttttagagggaccaaaattgattatagaggtgtataattgatta 52364018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 54173374 - 54173321
Alignment:
Q  192 tagttttttattcaataattgacttttacacacaaatttatagttcatctcact 245  Q
    ||||||||||||| |||||| | ||||||| | |||||||||||||| ||||||    
T  54173374 tagttttttattctataattaatttttacaaataaatttatagttcaactcact 54173321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 47356322 - 47356258
Alignment:
Q  174 acttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttca 238  Q
    ||||||||||| |||||||||| ||| |||  | |||||| ||||||||| ||||||| ||||||    
T  47356322 acttgaagttaagatttatagtctttgattatagaattgatttttacacataaatttaaagttca 47356258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 26100221 - 26100152
Alignment:
Q  176 ttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcatctcact 245  Q
    |||||| |||||||| ||| |||| |||| |||||||| |||||||||||||||||| ||||| ||||||    
T  26100221 ttgaagctaggatttgtagcttttgattctataattgatttttacacacaaatttatggttcaactcact 26100152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 15677905 - 15677823
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgactttt-acacacaaatttatagttcatctca 243  Q
    |||||||||  ||||||||| |||||||||||| |||| |||  | |||||| |||| |||||||||||||||||||| ||||    
T  15677905 agaattgattctacttgaagctaggatttatagcttttgattatagaattgattttttacacacaaatttatagttcaactca 15677823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 10367896 - 10367953
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    |||||||| ||| ||||||| |||||||||||||||||||| || | |||||||||||    
T  10367896 tatgtttggttctacttctagaggggccaaaattgattatggagatatagaattgatt 10367953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 32927899 - 32927971
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcatctcact 245  Q
    ||||||||| |||||||| ||| |||| |||  | |||| | |||||||||||||||||||||||| ||||||    
T  32927899 tacttgaagctaggatttgtagcttttgattatagaattcatttttacacacaaatttatagttcaactcact 32927971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 44141250 - 44141190
Alignment:
Q  57 gtatatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    ||||||||||| ||||||||||| |||  |||||||||||| || |||| |||||||||||    
T  44141250 gtatatgtttggttccacttctagaggaaccaaaattgattctggaggtctagaattgatt 44141190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 32736471 - 32736534
Alignment:
Q  175 cttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttca 238  Q
    |||||| ||| ||||| ||||||||||||  | |||| | ||||||||||||||||||||||||    
T  32736471 cttgaaattaagatttgtagttttttattttaaaattaatttttacacacaaatttatagttca 32736534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 38868496 - 38868575
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcatctca 243  Q
    |||||||  ||||||||| || ||||| ||| ||||  ||| |||||||| ||| |||||||||||||||||||| ||||    
T  38868496 aattgattctacttgaagctaagatttgtagcttttggttctataattgattttcacacacaaatttatagttcaactca 38868575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 44141137 - 44141063
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttca 238  Q
    |||||||  |||||||||||||||||| |||||||| |||| | | |||| ||| ||||| || |||||||||||    
T  44141137 aattgattctacttgaagttaggatttgtagtttttgattctagagttgattttcacacataattttatagttca 44141063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 4662981 - 4662916
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttca 238  Q
    ||||||||| |||||||| ||| ||||  ||| | |||||| |||||||||||||| |||||||||    
T  4662981 tacttgaagctaggatttgtagcttttgtttctagaattgatttttacacacaaatgtatagttca 4662916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 38868769 - 38868814
Alignment:
Q  192 tagttttttattcaataattgacttttacacacaaatttatagttc 237  Q
    ||||||||||||| |||||||| ||| || ||||||||||||||||    
T  38868769 tagttttttattctataattgattttcacgcacaaatttatagttc 38868814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 7533692 - 7533748
Alignment:
Q  56 agtatatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaat 112  Q
    |||||||||||| |||||||| |  ||||||||||||| ||| || |||||||||||    
T  7533692 agtatatgtttggttccacttttggaggggccaaaattaattctggaggtgtagaat 7533748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 41386904 - 41386821
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcatctcact 245  Q
    |||||||||  ||||||||| |||||||| ||| |||| |||| | ||||||  |||||||||||||||||| |||| ||||||    
T  41386904 agaattgattctacttgaagctaggatttgtagcttttaattctagaattgatatttacacacaaatttataattcaactcact 41386821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 40491585 - 40491657
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcatctcact 245  Q
    |||||||||||| | ||| ||| |||| |||| | |||||||||||||||||||||||| |||| | ||||||    
T  40491585 tacttgaagttaagttttgtagcttttgattctagaattgacttttacacacaaatttaaagtttaactcact 40491657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 45004873 - 45004937
Alignment:
Q  53 ttaagtatatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    |||||| ||| |||| || |||||||||| ||||||||||||||| |  ||||||||||||||||    
T  45004873 ttaagtgtatatttggtttcacttctaaaagggccaaaattgattctagaggtgtagaattgatt 45004937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 228
Target Start/End: Complemental strand, 5724820 - 5724653
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgattatg-catgtgtggttgga-----gtagaattgattttgcctc 153  Q
    |||||||| ||||||||||| ||||||||||||| ||| |  | |||||||||||||| || ||||| ||| ||       |||||||||||||||||||    
T  5724820 tatgtttggttccacttctagaggggccaaaattaattctagaagtgtagaattgattctgacatgtttggatgctttcaggtagaattgattttgcctc 5724721  T
Q  154 aagaatcaagaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaat 228  Q
          ||| |||||||  ||||||||| |||||||| ||  ||||||||| |||||||| ||||||||||||||    
T  5724720 ------caa-aattgattctacttgaagctaggatttgtaactttttattctataattgatttttacacacaaat 5724653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 25195818 - 25195929
Alignment:
Q  134 agtagaattgattttgcctcaagaatcaagaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttata 233  Q
    |||| ||||||||||||||  ||||   |||||||||  || || ||  |||||||||||| |||| |||| | |||||| || ||||||||||||||||    
T  25195818 agtaaaattgattttgccttcagaaatcagaattgattctaattaaaactaggatttatagcttttgattctagaattgaattgtacacacaaatttata 25195917  T
Q  234 gttcatctcact 245  Q
    ||||| ||||||    
T  25195918 gttcaactcact 25195929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 4907902 - 4907968
Alignment:
Q  51 aattaagtatatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    ||||||||||||||||| | ||| |||||||| | | |||||||||| || ||||||||||||||||    
T  4907902 aattaagtatatgtttggtcccatttctaaagagtctaaaattgattttgaaggtgtagaattgatt 4907968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 957712 - 957647
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaa 227  Q
    ||||||||| ||||||| || || |||||||||||||| |||| ||||| || |||||||||||||    
T  957712 agaattgattttacttgtagctaagatttatagtttttgattccataatcgatttttacacacaaa 957647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 1499761 - 1499821
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgattatg 120  Q
    |||||||| || ||||||||  ||| |||||||| |||||||| |||||||||||||||||    
T  1499761 tatgtttggtttcacttctattgggaccaaaattaattatgtaagtgtagaattgattatg 1499821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 26280598 - 26280684
Alignment:
Q  159 tcaagaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcatctcact 245  Q
    ||||||||||||   |||||||| ||| |||| |||||||| |||| | |||||| ||||||  |||||||||||||| | ||||||    
T  26280598 tcaagaattgattccacttgaagctagaatttgtagtttttgattccaaaattgatttttacgtacaaatttatagttaaactcact 26280684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 4907959 - 4908035
Alignment:
Q  162 agaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttca 238  Q
    ||||||||| ||| |||||| || ||||| |||||||| |||| |||||| || || ||| ||||||||||| ||||    
T  4907959 agaattgattttatttgaagctatgatttgtagtttttgattctataatttaccttcacaaacaaatttataattca 4908035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 30503098 - 30503161
Alignment:
Q  54 taagtatatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    ||||| |||| ||| ||||||||||||||||| ||||||||||| || | ||||||||||||||    
T  30503098 taagtgtatgcttggttccacttctaaaggggtcaaaattgattttggaagtgtagaattgatt 30503161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 31686047 - 31685982
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttca 238  Q
    ||||| ||||||| |  ||||||||||||||  | |||||||||||||| ||||||||||||||||    
T  31686047 tactttaagttagaaactatagttttttattttaaaattgacttttacatacaaatttatagttca 31685982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 2002773 - 2002718
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaat 228  Q
    ||||||||| |||||||| |||||||| |||| | |||||| ||||||||||||||    
T  2002773 tacttgaagctaggatttgtagtttttcattctaaaattgatttttacacacaaat 2002718  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 4376079 - 4376019
Alignment:
Q  177 tgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttca 238  Q
    ||||||||||||||||||||||| | || | |||||| ||| ||| ||||||||||||||||    
T  4376079 tgaagttaggatttatagtttttgaatctacaattga-tttcacatacaaatttatagttca 4376019  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 33047742 - 33047685
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    |||||||| || | |||||| |||| |||||||||||| || ||||||||||||||||    
T  33047742 tatgtttggtttcgcttctagagggaccaaaattgattttggaggtgtagaattgatt 33047685  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 3352074 - 3352142
Alignment:
Q  164 aattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttat 232  Q
    ||||||| |||||||||||| ||| ||  || |||| |||| |||||||| ||| ||||||||||||||    
T  3352074 aattgattttacttgaagttgggaattgcagcttttgattctataattgattttcacacacaaatttat 3352142  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 10644610 - 10644682
Alignment:
Q  173 tacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttcatctcact 245  Q
    |||||||||||| ||||| |||||||| |||  | |||| ||||| | ||| |||||||||||||| ||||||    
T  10644610 tacttgaagttaagatttgtagtttttcattatagaattaactttcatacataaatttatagttcaactcact 10644682  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 45066434 - 45066514
Alignment:
Q  158 atcaagaattgatattacttgaagttaggatttatagttttttattcaataattgacttttacacacaaatttatagttca 238  Q
    ||||| ||||||| ||| |||||||||  |||| ||||||||||||  | |||| | ||| ||||||||||||||| ||||    
T  45066434 atcaataattgattttagttgaagttaaaatttttagttttttattttaaaatttattttcacacacaaatttataattca 45066514  T

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Target: scaffold0314 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 17322 - 17381
Alignment:
Q  61 atgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgattatg 120  Q
    ||||||| ||||||||||| ||   |||||||||||| || |||||||||||||||||||    
T  17322 atgtttggttccacttctagagtaaccaaaattgattctggaggtgtagaattgattatg 17381  T

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Target: scaffold0168 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 31721 - 31778
Alignment:
Q  60 tatgtttgattccacttctaaaggggccaaaattgattatgtaggtgtagaattgatt 117  Q
    |||||||| ||||||||||| || | |||||||||||| |  ||||||||||||||||    
T  31721 tatgtttggttccacttctagagtgaccaaaattgattctagaggtgtagaattgatt 31778  T

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