View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9776_low_9 (Length: 240)
Name: NF9776_low_9
Description: NF9776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9776_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 761858 - 762067
Alignment:
| Q |
13 |
cacagaacaatagcggtctgcttaaaatcttctacactacatcccttcagccgatatttgtcaactatggtatattctcggccatttcaactgaaaaata |
112 |
Q |
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| T |
761858 |
cacagaacaatagcggtctgcttaaaatcttctacactacatcccttcagccgatatttgtcaactatggtatattctcggccatttcaactgaaaaata |
761957 |
T |
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| Q |
113 |
atcaaacagattattctacttgctcaattcctttcggtacatgaatgtcaaaacaaggttacttagtgtagctacaaatgtgaatattcctgggattcac |
212 |
Q |
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| T |
761958 |
atcaaacatattattctacttgctcaattcctttcggtacatgaatgtcaaaacaaggttacttagtgtagctacaaatgtgaatattcctgggattcac |
762057 |
T |
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| Q |
213 |
ctgcattaaa |
222 |
Q |
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| T |
762058 |
ctacattaaa |
762067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 214
Target Start/End: Original strand, 9584436 - 9584520
Alignment:
| Q |
130 |
acttgctcaattcctttcggtacatgaatgtcaaaacaaggttacttagtgtagctacaaatgtgaatattcctgggattcacct |
214 |
Q |
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| T |
9584436 |
acttgctcaattccttccagtatatgaatgtcaaaacaagtttacttactatagctacatctgtgaatattcttggtgttcacct |
9584520 |
T |
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