View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9777_high_10 (Length: 217)
Name: NF9777_high_10
Description: NF9777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9777_high_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 15360181 - 15359965
Alignment:
| Q |
1 |
ttggccatgtttactttctaacaacatttttaatttttactttgtatttgggtggccaatgttagggaatcatcataggtgagccgggagcaagaacgag |
100 |
Q |
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| T |
15360181 |
ttggccatgtttactttctaacaacatttttaatttttactttgtatttgagtggccggtgttagggaatcatcatagaagagccgggagcaagaacgag |
15360082 |
T |
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| Q |
101 |
ctaaatgatccagggtcaccaagagactggacaccacatttctacccaaaatcttaaggctttcggaggagacgtggtgtcccgatccctcagtggttct |
200 |
Q |
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| T |
15360081 |
ctaaatgatctaggatcaccaagagaccggacaccacatttcaacccaaaatcttaaggctttcggaggagacatggtgttccgatctctcggtggttca |
15359982 |
T |
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| Q |
201 |
gaaacattagcccgttg |
217 |
Q |
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| T |
15359981 |
gaagcattagcccgttg |
15359965 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 44800874 - 44800837
Alignment:
| Q |
7 |
atgtttactttctaacaacatttttaatttttactttg |
44 |
Q |
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| T |
44800874 |
atgtttactttctaacaacattttcaatttttactttg |
44800837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 44643231 - 44643268
Alignment:
| Q |
10 |
tttactttctaacaacatttttaatttttactttgtat |
47 |
Q |
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| T |
44643231 |
tttactttctaacaacattttcaatttttactttgtat |
44643268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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