View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9777_high_3 (Length: 395)
Name: NF9777_high_3
Description: NF9777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9777_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 3374033 - 3373666
Alignment:
| Q |
18 |
cgaacaacaaaataaactattcttgaacctccttcacaactatttcaatcaagatacgtgcacgatcacaaagaaagaataatctccatggaaggaagat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3374033 |
cgaacaacaaaataaactattcttgaacctccttcacaactgtttcaatcaagatacgtgcacgatcacaaagaaagaataatctccatggaaggaagat |
3373934 |
T |
|
| Q |
118 |
ggagatgagaggttaggtattgtaccagcagtagacacgggagcagctgccgttggtgtaacggttgaagttacctcatttttctgcgtttctagcttct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3373933 |
ggagatgagaggttaggtattgtaccagcagtagacacgggagcagctgccgttggtgtaacggttgaagttacctcatttttctgcgtttctagcttct |
3373834 |
T |
|
| Q |
218 |
gctcatgctgttcatttgccataaaactgccgaccactacctgatacatatcaatccattggaaagagtactgagaattcagtaaacttgtcaccgacac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3373833 |
gctcatgctgttcatttgccataaaactgccgaccactacctgatacatatcaatccattggaaagagtactgagaattcagtaaacttgtcaccgacac |
3373734 |
T |
|
| Q |
318 |
cgagtactaattaccacaaaggtggtgttttactacacaccggatcatatcagatatgcacacctttg |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3373733 |
cgagtactaattaccacaaaggtggtgttttactacacaccggatcatatcagatatgcacacctttg |
3373666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 3402166 - 3401889
Alignment:
| Q |
20 |
aacaacaaaataaactattcttgaacctccttcacaactatttcaatcaagatacgtgcacgatcacaaagaaaga--ataatctccatggaaggaagat |
117 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||||| ||||||| || || ||| ||| ||||||||||||||| || |||||| |||||||||||| |
|
|
| T |
3402166 |
aacaacaaaatacactattctcgacactccttcacaatcatttcaaccatgaaacgcgcatgatcacaaagaaagagaatcatctccgtggaaggaagat |
3402067 |
T |
|
| Q |
118 |
ggagatgagaggttaggtattgtaccagcagtagacacgggagcagctgccgttggtgtaacggttgaagttacctcatttttctgcgtttctagcttct |
217 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||| | |||||||||||| || |||| ||| |||||||||| ||| |||| |||| ||| |
|
|
| T |
3402066 |
gaagatgagag-ttaggtattgtaccagcagtagacacgggtggagctgccgttggcgttgatgttggagtcacctcattttcctgtgtttttagcatct |
3401968 |
T |
|
| Q |
218 |
gctcatgctgttcatttgccataaaactgccgaccactacctgatacatatcaatccattggaaagagtactgagaatt |
296 |
Q |
| |
|
||||| |||||||||| ||| | |||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3401967 |
gctcagactgttcatttcccagagaactgcttaccactacctgatacatatcaatccattggaaagagtaatgagaatt |
3401889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 81 - 287
Target Start/End: Complemental strand, 3378184 - 3377977
Alignment:
| Q |
81 |
gatcacaaagaaagaa--taatctccatggaaggaagatggagatgagaggttaggtattgtaccagcagtagacacgggagcagctgccgttggtgtaa |
178 |
Q |
| |
|
||||||||||||||| | |||||| ||||||||||||| |||||| || | |||||||||||||||||||||||| |||||||||||| |||| || | |
|
|
| T |
3378184 |
gatcacaaagaaagagactcatctccgtggaaggaagatgaagatgaaag-taaggtattgtaccagcagtagacacaggagcagctgccattggcgtta |
3378086 |
T |
|
| Q |
179 |
cggttgaagttacctcatttttctgcgtttctagcttctgctcatgctgttcatttgccataaaactgccgaccactacctgatacatatcaatccattg |
278 |
Q |
| |
|
|||||||| |||||||||| | ||||| |||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| || |
|
|
| T |
3378085 |
atgttgaagtcacctcattttcccgcgttcttagcttctgctcggactgttcatttgccagaaaactgcttaccactacctgatacatatcaatccactg |
3377986 |
T |
|
| Q |
279 |
gaaagagta |
287 |
Q |
| |
|
||||||||| |
|
|
| T |
3377985 |
gaaagagta |
3377977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 181 - 311
Target Start/End: Complemental strand, 3403371 - 3403244
Alignment:
| Q |
181 |
gttgaagttacctcatttttctgcgtttctagcttctgctcatgctgttcatttgccataaaactgccgaccactacctgatacatatcaatccattgga |
280 |
Q |
| |
|
|||||| |||||||||| ||||| |||| ||||||||||||||| |||| ||| || ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3403371 |
gttgaaattacctcattattctgtgtttttagcttctgctcatg---ttcacttggcagaaaactgcctaccactacctgatacatatcaatccattgga |
3403275 |
T |
|
| Q |
281 |
aagagtactgagaattcagtaaacttgtcac |
311 |
Q |
| |
|
|||||| ||| |||| |||||||||||| |
|
|
| T |
3403274 |
aagagtgatgataattgcataaacttgtcac |
3403244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 3369322 - 3369222
Alignment:
| Q |
136 |
attgtaccagcagtagacacgggagcagctgccgttggtgtaacggttgaagttacctcatttttctgcgtttctagcttctgctcatgctgttcatttg |
235 |
Q |
| |
|
|||| |||||||| ||||| | |||||||| | ||||| || || |||||| |||||||||| ||||| || | ||||||||||||||| |||||| ||| |
|
|
| T |
3369322 |
attggaccagcagaagacatgcgagcagctacagttggcgttactgttgaaattacctcattcttctgtgtgtttagcttctgctcatgttgttcacttg |
3369223 |
T |
|
| Q |
236 |
c |
236 |
Q |
| |
|
| |
|
|
| T |
3369222 |
c |
3369222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 3394939 - 3394839
Alignment:
| Q |
136 |
attgtaccagcagtagacacgggagcagctgccgttggtgtaacggttgaagttacctcatttttctgcgtttctagcttctgctcatgctgttcatttg |
235 |
Q |
| |
|
|||| |||||||| ||||| | |||||||| | ||||| || || |||||| |||||||||| ||||| || | ||||||||||||||| |||||| ||| |
|
|
| T |
3394939 |
attggaccagcagaagacatgcgagcagctacagttggcgttactgttgaaattacctcattcttctgtgtgtttagcttctgctcatgttgttcacttg |
3394840 |
T |
|
| Q |
236 |
c |
236 |
Q |
| |
|
| |
|
|
| T |
3394839 |
c |
3394839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 3368159 - 3368084
Alignment:
| Q |
20 |
aacaacaaaataaactattcttgaacctccttcacaactatttcaatcaagatacgtgcacgatcacaaagaaaga |
95 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||| || |||||||||| |||| || ||||||||||||||| |
|
|
| T |
3368159 |
aacaacaaagtacactattcttgatactccttcacaagcatctcaatcaagacacgtacatgatcacaaagaaaga |
3368084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 310
Target Start/End: Complemental strand, 3379931 - 3379876
Alignment:
| Q |
255 |
tacctgatacatatcaatccattggaaagagtactgagaattcagtaaacttgtca |
310 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| | |||||| | ||||||||||| |
|
|
| T |
3379931 |
tacctgacacatatcaatccattggaaagagtaattagaattgaataaacttgtca |
3379876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University