View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9777_high_6 (Length: 250)
Name: NF9777_high_6
Description: NF9777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9777_high_6 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 52517045 - 52517276
Alignment:
| Q |
19 |
aactttgaggattaataaacaacttaacagaaagggcttgtacataaaagctaatcagggaggatgcaggagacaaagttgagtaaaataaccatgaaaa |
118 |
Q |
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| T |
52517045 |
aactttgaggattaataaacaacttaacagaaagggcttgtacataaaagctaatcagggaggatgcaggagacaaagttgagtaaaataaccatgaaaa |
52517144 |
T |
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| Q |
119 |
tttcaataaaaaatgcatgccatctgcataaactagttcatattgagtagtaaccaattaaataatacctttatccttaattcattgtgtttgtgtatat |
218 |
Q |
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| T |
52517145 |
tttcaataaaaaatgcatgccatctgcagaaactagttcatattgagtagtaaccaattaaataatacctttatccttaattcattgtgtttgtgtatat |
52517244 |
T |
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| Q |
219 |
tgtgcataaagtttagtcttaaagtgatccac |
250 |
Q |
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| T |
52517245 |
tgtgcataaagtttagtcttaaagtggtccac |
52517276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 40803954 - 40804017
Alignment:
| Q |
117 |
aatttcaataaaaaatgcatgccatctgcataaactagttcatattgagtagtaaccaattaaa |
180 |
Q |
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| T |
40803954 |
aatttcaataaaaaatgcatgtcctctgcagaaactaattcatatggagtagtgaccaattaaa |
40804017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 55
Target Start/End: Original strand, 40803871 - 40803902
Alignment:
| Q |
24 |
tgaggattaataaacaacttaacagaaagggc |
55 |
Q |
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| T |
40803871 |
tgaggattaataaacaacttaacagaaagggc |
40803902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 41031688 - 41031466
Alignment:
| Q |
19 |
aactttgaggattaataaacaacttaacagaaagggcttgtacataaaagct-aatcagggaggatgcaggagacaaagttgagtaaaataaccatgaaa |
117 |
Q |
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| T |
41031688 |
aactttgaggattaataaacaacttaa-agaaagggcttgtagataaaagctgaatcagggaagatgcaggagacagagttgagtaaaagaaccatgaaa |
41031590 |
T |
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| Q |
118 |
atttcaataaaaaatgcatgc--catctgcataaactagttcatattgagtagtaaccaattaaataatacctttatccttaattcattgtgtttgtgta |
215 |
Q |
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|||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
41031589 |
atttcaataaaaaatgcatgaatcctctgcagaaactagttcatattgagtagtaaccaattaaataatacccttatccttaatccattgtgtttgtgta |
41031490 |
T |
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| Q |
216 |
tattgtgcataaagtttagtctta |
239 |
Q |
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| T |
41031489 |
tattgtgcataaagtttggtctta |
41031466 |
T |
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