View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9777_high_9 (Length: 218)
Name: NF9777_high_9
Description: NF9777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9777_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 55939187 - 55939372
Alignment:
| Q |
11 |
ggagcagagagagctattaaaaatgcttggcaatcatgaaactaaacatttgaattattcgagtcgtggtatgagtcacgaaccaattacaaggctgttt |
110 |
Q |
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| T |
55939187 |
ggagaagagagagctattaaaaatgcttggcaatcatgaaactaaacatttgaattattcgagtcgtggtatgagtcacgaaccaattacaaggctgttt |
55939286 |
T |
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| Q |
111 |
ttccaccctgaattgatcaacatcaattcatcagggtcaccatcaccacctcatgtttctctttcactatggccaacaacatcaca |
196 |
Q |
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| T |
55939287 |
ttccaccctgaattgatcaacatcaattcatcagggtcaccatcaccacctcatgtttctctttcactatggccaacaacatcaca |
55939372 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 9587702 - 9587745
Alignment:
| Q |
153 |
tcaccacctcatgtttctctttcactatggccaacaacatcaca |
196 |
Q |
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| T |
9587702 |
tcaccacctcatgtttctctttctctttggccaacaacatcaca |
9587745 |
T |
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