View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9777_low_1 (Length: 711)
Name: NF9777_low_1
Description: NF9777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9777_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 18 - 696
Target Start/End: Complemental strand, 5233764 - 5233084
Alignment:
| Q |
18 |
gtttctgtgagcttttgcaattgtgt--tcattgannnnnnnncattcattgaatcttgattaacaaagtcacaacatttatgtaagatatgttgattgt |
115 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5233764 |
gtttctgtgagcttttgcaattgtgtgttcattgattttttttcattcattgaatcttgattaacaaagtcacaacatttatgtaagatttgttgattgt |
5233665 |
T |
|
| Q |
116 |
gatgtaataagacaaattttcaaaagccatttgcaagcaactttcatccctctcaatttgttctttacatgattccaatgtaaagagaaacaaatttatt |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5233664 |
gatgtaataagacaaattttcaaaagccatttgcaagcaactttcatccctctcaatttgttctttacatgattccaatgtaaagagaaacaaatttatt |
5233565 |
T |
|
| Q |
216 |
tatggcaaaatggagcaataaatagtgctcaatcttctcagttacaagctctataattcatggaacaatattcaccaaaatagtttggctttgtaaagta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5233564 |
tatggcaaaatggagcaataaatagtgctcaatcttctcagttacaagctctataattcatggaacaatattcaccaaaatagtttggctttgtaaagta |
5233465 |
T |
|
| Q |
316 |
gtagtagtataaattatacaacatctctgcatccaatcttttggtgtaaacttgaactaccagaaaaagatggagcatcgatgttaaatatgaaacactt |
415 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
5233464 |
gtagta---taaattatacaacatctctgcatccaatcttttggtgtaaacttgaactaccagaaaaagatggagcatcaatgttaaatatgaaacattt |
5233368 |
T |
|
| Q |
416 |
tacacacgtgaatataatgataaaatttaaaccatattaatttggtaatttggtagaatcaaataatcaaactttatgttcttttcaccaatgaaattcc |
515 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5233367 |
tacacacgtgaatataataataaaatttaaaccatattaatttggtaatttggtagaatcaaataatcaaactttatgttcttttcaccaatgaaattcc |
5233268 |
T |
|
| Q |
516 |
agtagggtcacctccccattcttctagaacaaccaagacgttcccactcgaactcaaccatgaccgaggaatatgatacctatccaaagatt---nnnnn |
612 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5233267 |
agtagggtcacctccccattcttctagaacaaccaagacgttcccactcgaactcaaccatgaccgaggaatatgatacctatccaaagatttaaaaaaa |
5233168 |
T |
|
| Q |
613 |
nnnnnnnnnttactctcataatcttcgattacttacatcattattgtaaagtaccacgttatatgaaatcttaccatttctgtg |
696 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5233167 |
aaaaaaaaattactctcataatcttcgattacttacatcattattgtaaagtaccacgttatatgaaatcttaccatttctgtg |
5233084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 472 - 605
Target Start/End: Complemental strand, 17129208 - 17129075
Alignment:
| Q |
472 |
aatcaaataatcaaactttatgttcttttcaccaatgaaattccagtagggtcacctccccattcttctagaacaaccaagacgttcccactcgaactca |
571 |
Q |
| |
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|||||||| | || |||| ||||||||||||||| ||||||||| |||||||| |||||||||||||| | ||||||||||||||||| || | ||| |
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| T |
17129208 |
aatcaaatgagcacacttcatgttcttttcaccagtgaaattccggtagggtcgcctccccattcttccaacacaaccaagacgttcccgcttgggttca |
17129109 |
T |
|
| Q |
572 |
accatgaccgaggaatatgatacctatccaaaga |
605 |
Q |
| |
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|||||| ||||||||||||||||| || ||||| |
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| T |
17129108 |
gccatgatcgaggaatatgatacctgtcgaaaga |
17129075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 17129903 - 17129837
Alignment:
| Q |
150 |
aagcaactttcatccctctcaatttgttctttacatgattccaatgtaaagagaaacaaatttattt |
216 |
Q |
| |
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|||||||||| ||| || |||||||||||||||||| | ||| ||||||| | |||||||||||||| |
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| T |
17129903 |
aagcaacttttatcactttcaatttgttctttacataactcctatgtaaaaacaaacaaatttattt |
17129837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 492 - 539
Target Start/End: Original strand, 52546538 - 52546585
Alignment:
| Q |
492 |
tgttcttttcaccaatgaaattccagtagggtcacctccccattcttc |
539 |
Q |
| |
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||||||||||||||| || |||||| |||||||||||||||||||||| |
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| T |
52546538 |
tgttcttttcaccaaagatattccattagggtcacctccccattcttc |
52546585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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