View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9777_low_4 (Length: 380)

Name: NF9777_low_4
Description: NF9777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9777_low_4
NF9777_low_4
[»] chr8 (13 HSPs)
chr8 (16-363)||(11080000-11080328)
chr8 (249-345)||(1653206-1653302)
chr8 (249-345)||(1741582-1741678)
chr8 (32-125)||(4678151-4678243)
chr8 (34-125)||(4676206-4676296)
chr8 (141-200)||(5690727-5690786)
chr8 (38-146)||(37869-37976)
chr8 (32-113)||(26174323-26174404)
chr8 (167-199)||(37836-37868)
chr8 (59-113)||(26175468-26175522)
chr8 (205-234)||(1653360-1653389)
chr8 (205-234)||(1741736-1741765)
chr8 (176-204)||(26175387-26175415)
[»] chr2 (4 HSPs)
chr2 (32-200)||(6016847-6017013)
chr2 (34-204)||(36316286-36316456)
chr2 (39-113)||(12015132-12015206)
chr2 (130-162)||(27750849-27750881)
[»] chr5 (13 HSPs)
chr5 (32-203)||(35309147-35309318)
chr5 (34-204)||(31185993-31186161)
chr5 (32-204)||(35304676-35304845)
chr5 (249-359)||(28001379-28001489)
chr5 (32-164)||(43233830-43233963)
chr5 (32-125)||(39040539-39040631)
chr5 (130-203)||(41951830-41951903)
chr5 (32-113)||(27405306-27405386)
chr5 (130-203)||(15424618-15424689)
chr5 (32-113)||(25213827-25213907)
chr5 (32-113)||(25277977-25278057)
chr5 (130-197)||(41949432-41949503)
chr5 (205-234)||(28001292-28001321)
[»] chr7 (5 HSPs)
chr7 (31-204)||(7737276-7737450)
chr7 (29-192)||(48821852-48822016)
chr7 (34-196)||(36647489-36647657)
chr7 (32-113)||(35130603-35130683)
chr7 (32-113)||(40772871-40772952)
[»] chr4 (6 HSPs)
chr4 (32-203)||(27510483-27510655)
chr4 (103-204)||(5444687-5444789)
chr4 (103-203)||(35783689-35783790)
chr4 (31-203)||(13436433-13436605)
chr4 (28-203)||(11001291-11001463)
chr4 (116-204)||(5440792-5440880)
[»] scaffold0263 (2 HSPs)
scaffold0263 (30-163)||(22917-23050)
scaffold0263 (176-204)||(22887-22915)
[»] chr1 (3 HSPs)
chr1 (32-203)||(41418053-41418223)
chr1 (32-113)||(9905790-9905869)
chr1 (32-113)||(9908181-9908260)
[»] chr3 (9 HSPs)
chr3 (32-163)||(39091329-39091460)
chr3 (32-124)||(35610873-35610966)
chr3 (32-113)||(27825693-27825773)
chr3 (39-112)||(19439528-19439601)
chr3 (32-113)||(33785847-33785927)
chr3 (130-204)||(4607404-4607476)
chr3 (174-204)||(17742962-17742992)
chr3 (174-204)||(19044282-19044312)
chr3 (32-113)||(8504202-8504282)
[»] chr6 (7 HSPs)
chr6 (89-203)||(23306795-23306913)
chr6 (35-204)||(9231480-9231651)
chr6 (27-113)||(6860169-6860255)
chr6 (32-113)||(14618734-14618816)
chr6 (59-113)||(10774543-10774597)
chr6 (176-204)||(14618869-14618897)
chr6 (34-113)||(29427400-29427477)
[»] scaffold0017 (1 HSPs)
scaffold0017 (83-203)||(182936-183057)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 363
Target Start/End: Complemental strand, 11080328 - 11080000
Alignment:
Q  16 tctccttcattgaaactgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||    
T  11080328 tctccttcattgaaactgttaggaaacatgatatccaatgaaagaatgagaaaaaactcggagaatatttctattaatgataaaagtgaatattaaaatg 11080229  T
Q  116 ataagagataccttctaatgaggtggttacatctatatatactactacttgactaatgctaactagtatctaacatatatctctaatagaaaccaatagg 215  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11080228 ataagagataccttctaatgaggtagttacttctatatatactactacttgacaaatgctaactagtatctaacatatatctctaatagaaaccaatagg 11080129  T
Q  216 tagaaaatcttcatcattaagctatttcaagttccataagctatttcaaaaacttgttccttgctcaatttgcattcactcccaaaccctacaaaaacaa 315  Q
    ||||||||||||||||||||||||||                   ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  11080128 tagaaaatcttcatcattaagctatt-------------------tcaaaaacttgtttcttgctcaatttgcattcactcccaaaccctacaaaaaaaa 11080048  T
Q  316 ccgattttgctgcttgcttatcaagccactcaaacatcgtagtctctg 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11080047 ccgattttgctgcttgcttatcaagccactcaaacatcgtagtctctg 11080000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 249 - 345
Target Start/End: Complemental strand, 1653302 - 1653206
Alignment:
Q  249 ccataagctatttcaaaaacttgttccttgctcaatttgcattcactcccaaaccctacaaaaacaaccgattttgctgcttgcttatcaagccact 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1653302 ccataagctatttcaaaaacttgttccttgctcaatttgcattcactcccaaaccctacaaaaacaaccgattttgttgcttgcttatcaagccact 1653206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 249 - 345
Target Start/End: Complemental strand, 1741678 - 1741582
Alignment:
Q  249 ccataagctatttcaaaaacttgttccttgctcaatttgcattcactcccaaaccctacaaaaacaaccgattttgctgcttgcttatcaagccact 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  1741678 ccataagctatttcaaaaacttgttccttgctcaatttgcattcactcccaatccctacaaaaacaaccgattttgttgcttgcttatcaagccact 1741582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 4678243 - 4678151
Alignment:
Q  32 tgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaatgataagagata 125  Q
    |||||||||||||||||||||  |||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4678243 tgttaggaaacatgatatccac-gaaggaatgagagaaaactaagagaatatttctattgatgataaaagtgaatattacaatgataagagata 4678151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 34 - 125
Target Start/End: Complemental strand, 4676296 - 4676206
Alignment:
Q  34 ttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaatgataagagata 125  Q
    |||||||||||||||||||  |||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4676296 ttaggaaacatgatatccac-gaaggaatgagagaaaactaagagaatatttctattgatgataaaagtgaatattacaatgataagagata 4676206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 5690786 - 5690727
Alignment:
Q  141 gttacatctatatatactactacttgactaatgctaactagtatctaacatatatctcta 200  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5690786 gttacaactatatatactactacttcactaatgctaactagtatctaacatatatctcta 5690727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 37976 - 37869
Alignment:
Q  38 gaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattac-aatgataagagataccttctaatga 136  Q
    |||| |||||||||||||||||||||||| |||| |  ||||   |||||||| ||||||||||||||| |||| |||||||||||||| ||| ||||||    
T  37976 gaaatatgatatccaatgaaggaatgagagaaaattaagaga--ctttctatttatgataaaagtgaatgttacaaatgataagagatatcttttaatga 37879  T
Q  137 ggtggttaca 146  Q
    ||||||||||    
T  37878 ggtggttaca 37869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 26174404 - 26174323
Alignment:
Q  32 tgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaa 113  Q
    |||||| ||||||||||||||| |||||||||||| |||||||  | ||| ||| |||||||||||||||||||||||||||    
T  26174404 tgttagtaaacatgatatccaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaa 26174323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 37868 - 37836
Alignment:
Q  167 actaatgctaactagtatctaacatatatctct 199  Q
    |||||||||||||||||||||||||||||||||    
T  37868 actaatgctaactagtatctaacatatatctct 37836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 26175522 - 26175468
Alignment:
Q  59 gaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaa 113  Q
    |||||||| |||||||  | ||| ||| |||||||||||||||||||||||||||    
T  26175522 gaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaa 26175468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 234
Target Start/End: Complemental strand, 1653389 - 1653360
Alignment:
Q  205 aaaccaataggtagaaaatcttcatcatta 234  Q
    ||||||||||||||||||||||||||||||    
T  1653389 aaaccaataggtagaaaatcttcatcatta 1653360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 234
Target Start/End: Complemental strand, 1741765 - 1741736
Alignment:
Q  205 aaaccaataggtagaaaatcttcatcatta 234  Q
    ||||||||||||||||||||||||||||||    
T  1741765 aaaccaataggtagaaaatcttcatcatta 1741736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 26175415 - 26175387
Alignment:
Q  176 aactagtatctaacatatatctctaatag 204  Q
    |||||||||||||||||||||||||||||    
T  26175415 aactagtatctaacatatatctctaatag 26175387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 32 - 200
Target Start/End: Original strand, 6016847 - 6017013
Alignment:
Q  32 tgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaatgataagagataccttct 131  Q
    |||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6016847 tgttaggaaacatgatatccaatgaaggaatgggaaaaaactc--agaatatttctattgatgataaaagtgaatgttacaatgataagagataccttct 6016944  T
Q  132 aatgaggtggttacatctatatatactactacttgactaatgctaactagtatctaacatatatctcta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6016945 aatgaggtggttacatctatatatactactacttgactaatgctaactagtatctaacatatatctcta 6017013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 34 - 204
Target Start/End: Original strand, 36316286 - 36316456
Alignment:
Q  34 ttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaatgataagagataccttctaa 133  Q
    ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36316286 ttaggaaacatgatatccaatgaaggaatgagagaaaactcagacaatatttctattgatgataaaagtgaatattacaatgatatgagataccttctaa 36316385  T
Q  134 tgaggtggttacatctatatatactactacttgactaatgctaactagtatctaacatatatctctaatag 204  Q
    ||||||||||||| |||||||||||||||  | |||| |||||||||||||||||||||||||||||||||    
T  36316386 tgaggtggttacaactatatatactactatataactagtgctaactagtatctaacatatatctctaatag 36316456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 12015206 - 12015132
Alignment:
Q  39 aaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaa 113  Q
    ||||||||||||||| ||| |||||||| |||||||  | ||||||| |||||||||||||||||||||||||||    
T  12015206 aaacatgatatccaaggaaagaatgagagaaaactcaaataatatttgtattgatgataaaagtgaatattacaa 12015132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 27750849 - 27750881
Alignment:
Q  130 ctaatgaggtggttacatctatatatactacta 162  Q
    ||||||||||||||||| |||||||||||||||    
T  27750849 ctaatgaggtggttacaactatatatactacta 27750881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 7e-71; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 32 - 203
Target Start/End: Original strand, 35309147 - 35309318
Alignment:
Q  32 tgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaatgataagagataccttct 131  Q
    |||||||||||||||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||| |||||||||||||||||||||| ||| |    
T  35309147 tgttaggaaacatgatatccaatgaaggaatgagaaaaatttcatagaatatttctattgatgataaaagtaaatattacaatgataagagatagcttat 35309246  T
Q  132 aatgaggtggttacatctatatatactactacttgactaatgctaactagtatctaacatatatctctaata 203  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  35309247 aatgaggtggttacatctatatatactactatttgactaatgctaattagtatctaacatatatctctaata 35309318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 34 - 204
Target Start/End: Original strand, 31185993 - 31186161
Alignment:
Q  34 ttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaatgataagagataccttctaa 133  Q
    |||||||||||||||||||| |||||||||||| |||||||  | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31185993 ttaggaaacatgatatccaacgaaggaatgagagaaaactc--ataatatttctattgatgataaaagtgaatattacaatgatatgagataccttctaa 31186090  T
Q  134 tgaggtggttacatctatatatactactacttgactaatgctaactagtatctaacatatatctctaatag 204  Q
    ||||||||||||| |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||    
T  31186091 tgaggtggttacaactatatatactactacataactagtgctaactagtatctaacatatatctctaatag 31186161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 35304676 - 35304845
Alignment:
Q  32 tgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaatgataagagataccttct 131  Q
    |||||||||||||||||| |||||||| |||||||| || ||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  35304676 tgttaggaaacatgatattcaatgaagaaatgagaagaatctcagagaatatttctattgatgataaaagtgaatattataatgataagaaataccttct 35304775  T
Q  132 aatgaggtggttacatctatatatactactacttgactaatgctaactagtatctaacatatatctctaatag 204  Q
    ||||||||||||| |||||||||   ||||||||||||||||||||||||||| ||||||||||||| |||||    
T  35304776 aatgaggtggttatatctatata---tactacttgactaatgctaactagtatttaacatatatctcaaatag 35304845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 249 - 359
Target Start/End: Original strand, 28001379 - 28001489
Alignment:
Q  249 ccataagctatttcaaaaacttgttccttgctcaatttgcattcactcccaaaccctacaaaaacaaccgattttgctgcttgcttatcaagccactcaa 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| ||    
T  28001379 ccataagctatttcaaaaacttgttccttgctcaatttgcattcactcccaaaccctacaaaaacaaccgattttgttgtttgcctatcaagccactgaa 28001478  T
Q  349 acatcgtagtc 359  Q
    | |||| ||||    
T  28001479 atatcgcagtc 28001489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 32 - 164
Target Start/End: Complemental strand, 43233963 - 43233830
Alignment:
Q  32 tgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattac-aatgataagagataccttc 130  Q
    ||||||||||||||  |||||  |||||||||||| |||||||  ||||| |||||||||||||||||  |||||||||| ||||||||||||||| |||    
T  43233963 tgttaggaaacatggcatccatggaaggaatgagagaaaactcaaagaatctttctattgatgataaagttgaatattacaaatgataagagatactttc 43233864  T
Q  131 taatgaggtggttacatctatatatactactact 164  Q
    ||| |||||| ||||| |||||||||||| ||||    
T  43233863 taaagaggtgattacaactatatatactaatact 43233830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 39040539 - 39040631
Alignment:
Q  32 tgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaatgataagagata 125  Q
    |||||||||||||||||||||   ||||||||||| ||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39040539 tgttaggaaacatgatatccaca-aaggaatgagagaaaactaagagaatgtttctattgatgataaaagtgaatattacaatgataagagata 39040631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 41951830 - 41951903
Alignment:
Q  130 ctaatgaggtggttacatctatatatactactacttgactaatgctaactagtatctaacatatatctctaata 203  Q
    |||||| ||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41951830 ctaatggggttgttacaactatatatactactacttcactaatgctaactagtatctaacatatatctctaata 41951903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 27405306 - 27405386
Alignment:
Q  32 tgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaa 113  Q
    ||||||||||||||||||||||||||||||||||| |||||||  | ||| ||| |||||||| | ||||||||||||||||    
T  27405306 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatgtttgtattgatggt-aaagtgaatattacaa 27405386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 15424618 - 15424689
Alignment:
Q  130 ctaatgaggtggttacatctatatatactactacttgactaatgctaactagtatctaacatatatctctaata 203  Q
    |||||| ||| |||||| |||||||||||||||||| |||||  ||||||||||||||||||||||||| ||||    
T  15424618 ctaatggggttgttacaactatatatactactacttcactaa--ctaactagtatctaacatatatctcgaata 15424689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 25213907 - 25213827
Alignment:
Q  32 tgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaa 113  Q
    ||||||||||||||||||||||||| ||||||||| ||||||   | ||| ||| |||||||||| ||||||||||||||||    
T  25213907 tgttaggaaacatgatatccaatgagggaatgagagaaaacttaaataatttttgtattgatgat-aaagtgaatattacaa 25213827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 25278057 - 25277977
Alignment:
Q  32 tgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaa 113  Q
    ||||||||||||||||||||||||| ||||||||| ||||||   | ||| ||| |||||||||| ||||||||||||||||    
T  25278057 tgttaggaaacatgatatccaatgagggaatgagagaaaacttaaataatttttgtattgatgat-aaagtgaatattacaa 25277977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 41949432 - 41949503
Alignment:
Q  130 ctaatgaggtggttacatctatatatactactacttgactaatg----ctaactagtatctaacatatatct 197  Q
    |||||| ||| |||||| |||||||||||||||||| |||||||    ||| ||||||||||||||||||||    
T  41949432 ctaatggggttgttacaactatatatactactacttcactaatgccaactagctagtatctaacatatatct 41949503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 234
Target Start/End: Original strand, 28001292 - 28001321
Alignment:
Q  205 aaaccaataggtagaaaatcttcatcatta 234  Q
    ||||||||||||||||||||||||||||||    
T  28001292 aaaccaataggtagaaaatcttcatcatta 28001321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 4e-63; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 31 - 204
Target Start/End: Complemental strand, 7737450 - 7737276
Alignment:
Q  31 ctgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattac-aatgataagagatacctt 129  Q
    |||||||||||||||||||||||||||||||||||| ||||||  |||||| ||||||||||||||||||||||||||||| |||||||||||||| |||    
T  7737450 ctgttaggaaacatgatatccaatgaaggaatgagagaaaactaagagaatctttctattgatgataaaagtgaatattacaaatgataagagatatctt 7737351  T
Q  130 ctaatgaggtggttacatctatatatactactacttgactaatgctaactagtatctaacatatatctctaatag 204  Q
    ||||||||||| |||||  ||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||    
T  7737350 ctaatgaggtgattacaattatatatactactacatgactaatactaactagtatctaacctatatctctaatag 7737276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 29 - 192
Target Start/End: Original strand, 48821852 - 48822016
Alignment:
Q  29 aactgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattac-aatgataagagatacc 127  Q
    |||||||| |||||||||||||||  |||| ||||||| ||||||| |||||| ||||||||||||||||| ||||||||||| |||| ||| |||| ||    
T  48821852 aactgttatgaaacatgatatccatggaagaaatgagagaaaactcagagaatttttctattgatgataaatgtgaatattacaaatggtaaaagatgcc 48821951  T
Q  128 ttctaatgaggtggttacatctatatatactactacttgactaatgctaactagtatctaacata 192  Q
    ||||||| ||||||||||| |||||||||||||||  ||||||||||| ||| ||| ||||||||    
T  48821952 ttctaataaggtggttacaactatatatactactatatgactaatgctcacttgtaactaacata 48822016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 34 - 196
Target Start/End: Original strand, 36647489 - 36647657
Alignment:
Q  34 ttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatatta-caatgataagagataccttcta 132  Q
    |||| ||||||||||||||||||| |||||||| ||||||  ||||||||||||||||||||||||| ||||||| |  |||||||||||||||||||||    
T  36647489 ttagaaaacatgatatccaatgaaagaatgagagaaaacttagagaatatttctattgatgataaaaatgaatataagaaatgataagagataccttcta 36647588  T
Q  133 atgaggtggttacatctatatatactactacttgactaa-----tgctaactagtatctaacatatatc 196  Q
    ||||||||||| || ||||||||| |||||  |||||||     | ||||||| |||||||||||||||    
T  36647589 atgaggtggtttcaactatatatagtactaaatgactaatattgtactaactattatctaacatatatc 36647657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 35130683 - 35130603
Alignment:
Q  32 tgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaa 113  Q
    ||||||||||||||||||||||||||||||||||| |||||||  | ||| ||| |||||||||| ||||||||||||||||    
T  35130683 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatgtttgtattgatgat-aaagtgaatattacaa 35130603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 40772871 - 40772952
Alignment:
Q  32 tgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaa 113  Q
    |||||| |||||| |||| ||| |||||||||||| |||||||  | ||| ||| |||||||||||||||||||||||||||    
T  40772871 tgttagtaaacatcatatacaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaa 40772952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 32 - 203
Target Start/End: Original strand, 27510483 - 27510655
Alignment:
Q  32 tgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattac-aatgataagagataccttc 130  Q
    ||||||||||||||||||||||||||||||||||| ||||||  |||||| ||||||||||||||||||||||||||||| |||||| | || | |||||    
T  27510483 tgttaggaaacatgatatccaatgaaggaatgagagaaaactaagagaatctttctattgatgataaaagtgaatattacaaatgatcaaaggttccttc 27510582  T
Q  131 taatgaggtggttacatctatatatactactacttgactaatgctaactagtatctaacatatatctctaata 203  Q
    |||||||||| ||||| ||||||| |||||||| |||||||| |||||||||||||||| |||||||||||||    
T  27510583 taatgaggtgattacaactatatacactactacatgactaatactaactagtatctaacctatatctctaata 27510655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 103 - 204
Target Start/End: Complemental strand, 5444789 - 5444687
Alignment:
Q  103 gaatattacaa-tgataagagataccttctaatgaggtggttacatctatatatactactacttgactaatgctaactagtatctaacatatatctctaa 201  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| | ||||||||||||||||||    
T  5444789 gaatattacaaatgataagagataccttctaatgaggtggttacaactatatatactactacttaactaatactaactaatctctaacatatatctctaa 5444690  T
Q  202 tag 204  Q
    |||    
T  5444689 tag 5444687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 35783790 - 35783689
Alignment:
Q  103 gaatattacaa-tgataagagataccttctaatgaggtggttacatctatatatactactacttgactaatgctaactagtatctaacatatatctctaa 201  Q
    ||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| ||||||||||||||||||||    
T  35783790 gaatattacaaatgataagagacaccttctaatgaggtggttacaactatatatactactacttaactaatactaactaatatctaacatatatctctaa 35783691  T
Q  202 ta 203  Q
    ||    
T  35783690 ta 35783689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 31 - 203
Target Start/End: Original strand, 13436433 - 13436605
Alignment:
Q  31 ctgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaa-tgataagagata-cct 128  Q
    |||||||||||||||||||  ||  ||||||||||| |||||||  ||| ||||| ||||||||||||||||||||||||||| |||| | || || ||     
T  13436433 ctgttaggaaacatgatatttaagaaaggaatgagagaaaactca-agattatttttattgatgataaaagtgaatattacaaatgatga-agttatccc 13436530  T
Q  129 tctaatgaggtggttacatctatatatactactacttgactaatgctaactagtatctaacatatatctctaata 203  Q
     |||||||| | |||||| |||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||    
T  13436531 actaatgagattgttacaactatatatactactacttcacttatgctaaccagtatctaacatatatctctaata 13436605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 28 - 203
Target Start/End: Original strand, 11001291 - 11001463
Alignment:
Q  28 aaactgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattaca-atgataagagatac 126  Q
    |||||||||||||||||||||||||  |||| | ||| | |||||||  ||||| ||| |||||||||||||||||||| ||||| ||||||| | ||||    
T  11001291 aaactgttaggaaacatgatatccatggaagaactgaaagaaaactc-aagaat-tttttattgatgataaaagtgaatgttacagatgataaaaaatac 11001388  T
Q  127 cttctaatgaggtggttacatctatatatactactacttgactaatgctaactagtatctaacatatatctctaata 203  Q
    |||||| |||| |||||| | |  |||| |||||||  ||| ||||||||||| ||| |||||||||||||| ||||    
T  11001389 cttctagtgagatggttaaaac--tataaactactatatgattaatgctaacttgtaactaacatatatctcgaata 11001463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 204
Target Start/End: Complemental strand, 5440880 - 5440792
Alignment:
Q  116 ataagagataccttctaatgaggtggttacatctatatatactactacttgactaatgctaactagtatctaacatatatctctaatag 204  Q
    |||||| ||||||||||| |||||||||||| |||||||||||||||||| |||||| | ||||| | |||||| ||||||||||||||    
T  5440880 ataagaaataccttctaacgaggtggttacaactatatatactactacttaactaataccaactaatctctaacctatatctctaatag 5440792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 23050 - 22917
Alignment:
Q  30 actgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaatgataagagatacctt 129  Q
    ||||||||||||||||||||||||||||||||||||| |||||||  | |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23050 actgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatatttctattgatgataaaagtgaatattacaatgataagagctacctt 22951  T
Q  130 ctaatgaggtggttacatctatatatactactac 163  Q
    |||||||||||||||||  |||||||||||||||    
T  22950 ctaatgaggtggttacaagtatatatactactac 22917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 22915 - 22887
Alignment:
Q  176 aactagtatctaacatatatctctaatag 204  Q
    |||||||||||||||||||||||||||||    
T  22915 aactagtatctaacatatatctctaatag 22887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 32 - 203
Target Start/End: Complemental strand, 41418223 - 41418053
Alignment:
Q  32 tgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaa-tgataagagataccttc 130  Q
    ||||||||||||||||||||||||||||||| ||| ||||||   ||| | |||| |||||||||||||||||||||||||| ||||||||||| |||||    
T  41418223 tgttaggaaacatgatatccaatgaaggaattagagaaaacta--agattctttcaattgatgataaaagtgaatattacaaatgataagagatgccttc 41418126  T
Q  131 taatgaggtggttacatctatatatactactacttgactaatgctaactagtatctaacatatatctctaata 203  Q
    |||||||||||||| | ||||||||||||||   |||||| ||||||||||||||||||||||||||||||||    
T  41418125 taatgaggtggttagaactatatatactactttatgactagtgctaactagtatctaacatatatctctaata 41418053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 9905790 - 9905869
Alignment:
Q  32 tgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaa 113  Q
    ||||||||||||||||||||||  ||||||||||| |||||||  | ||| ||| |||||||||| ||||||||||||||||    
T  9905790 tgttaggaaacatgatatccaa-caaggaatgagagaaaactcaaataatctttgtattgatgat-aaagtgaatattacaa 9905869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 9908181 - 9908260
Alignment:
Q  32 tgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaa 113  Q
    ||||||||||||||||||||||  ||||||||||| |||||||  | ||| ||| |||||||||| ||||||||||||||||    
T  9908181 tgttaggaaacatgatatccaa-caaggaatgagagaaaactcaaataatctttgtattgatgat-aaagtgaatattacaa 9908260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 39091329 - 39091460
Alignment:
Q  32 tgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaatgataagagataccttct 131  Q
    ||||| ||||||||||||||||||||||||||||| |||||||  | ||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  39091329 tgttatgaaacatgatatccaatgaaggaatgagagaaaactcaaataatatttctattgatgatagaagtgaatattacaatgataaaagataccttct 39091428  T
Q  132 aatgaggtggttacatctatatatactactac 163  Q
     ||||||||||||||  |||||||||||||||    
T  39091429 gatgaggtggttacaaatatatatactactac 39091460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 35610966 - 35610873
Alignment:
Q  32 tgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattac-aatgataagagat 124  Q
    ||||||||||||||||||||||||||||||||||| |||||||  |||||| ||||||||||||||||| |||| ||||| |||||||||||||    
T  35610966 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaagaatacttctattgatgataaaattgaaaattacaaatgataagagat 35610873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 27825693 - 27825773
Alignment:
Q  32 tgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaa 113  Q
    ||||||||||||||||||||||||||||||||||| |||||||  | ||| ||| |||||||||| ||||||||||||||||    
T  27825693 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatctttgtattgatgat-aaagtgaatattacaa 27825773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 19439601 - 19439528
Alignment:
Q  39 aaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattaca 112  Q
    ||||||||||||||| |||||||||||| |||||||  | ||| ||| ||||||||||||||||||||||||||    
T  19439601 aaacatgatatccaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattaca 19439528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 33785927 - 33785847
Alignment:
Q  32 tgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaa 113  Q
    ||||||||||||||||||||||||||||||||||| |||||||  | ||| ||| |||||||||| |||||||||| |||||    
T  33785927 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaacaatctttgtattgatgat-aaagtgaatagtacaa 33785847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 4607476 - 4607404
Alignment:
Q  130 ctaatgaggtggttacatctatatatactactacttgactaatgctaactagtatctaacatatatctctaatag 204  Q
    |||||| ||| |||||| |||||||||||||||||| |||||  ||| ||||||||||||||||||||| |||||    
T  4607476 ctaatggggttgttacaactatatatactactacttcactaa--ctacctagtatctaacatatatctcaaatag 4607404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 17742992 - 17742962
Alignment:
Q  174 ctaactagtatctaacatatatctctaatag 204  Q
    |||||||||||||||||||||||||||||||    
T  17742992 ctaactagtatctaacatatatctctaatag 17742962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 19044312 - 19044282
Alignment:
Q  174 ctaactagtatctaacatatatctctaatag 204  Q
    |||||||||||||||||||||||||||||||    
T  19044312 ctaactagtatctaacatatatctctaatag 19044282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 8504202 - 8504282
Alignment:
Q  32 tgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaa 113  Q
    ||||||||| ||||| |||||  |||||||||||| |||||||  | ||  |||||||||||||| ||||||||||| ||||    
T  8504202 tgttaggaatcatgaaatccatggaaggaatgagagaaaactcaaataagctttctattgatgat-aaagtgaatatcacaa 8504282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 89 - 203
Target Start/End: Complemental strand, 23306913 - 23306795
Alignment:
Q  89 ttgatgataaaagtgaatattacaa-tgataa---gagataccttctaatgaggtggttacatctatatatactactacttgactaatgctaactagtat 184  Q
    ||||||||||| ||||||||||||| ||||||   ||||||||||||||||||||||| ||| || | |||||||||   ||||||||||||||||||||    
T  23306913 ttgatgataaatgtgaatattacaaatgataaaaagagataccttctaatgaggtggtgacaactttctatactactttgtgactaatgctaactagtat 23306814  T
Q  185 ctaacatatatctctaata 203  Q
    |||||||||||||||||||    
T  23306813 ctaacatatatctctaata 23306795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 35 - 204
Target Start/End: Complemental strand, 9231651 - 9231480
Alignment:
Q  35 taggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaa-tgataagagataccttctaa 133  Q
    |||||||||||||||||   |||| ||||||| || ||||  ||||| ||||||||||||||||||||||||||||||| ||||||||||| || |||||    
T  9231651 taggaaacatgatatccgtggaag-aatgagagaatactcaaagaatctttctattgatgataaaagtgaatattacaagtgataagagat-ccctctaa 9231554  T
Q  134 tgaggtggttacatctatatatactactacttgactaatgctaac---tagtatctaacatatatctctaatag 204  Q
    |||||||| |||| |||||||||||||||  ||||||||  ||||   || || ||||| ||||||||||||||    
T  9231553 tgaggtggctacaactatatatactactatatgactaatattaacaagtaataactaacctatatctctaatag 9231480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 6860255 - 6860169
Alignment:
Q  27 gaaactgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaa 113  Q
    ||||||||||| ||||||||||||||| |||||||||||| |||||||  | ||| ||| |||||||||||||||||||||||||||    
T  6860255 gaaactgttagtaaacatgatatccaaggaaggaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaa 6860169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 14618734 - 14618816
Alignment:
Q  32 tgttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaat-atttctattgatgataaaagtgaatattacaa 113  Q
    |||||| ||||||||||||||| |||||||||| | |||||||  | |||  ||| ||||||||||||||||||| |||||||    
T  14618734 tgttagtaaacatgatatccaaggaaggaatgaaagaaaactcaaataatgttttgtattgatgataaaagtgaacattacaa 14618816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 10774543 - 10774597
Alignment:
Q  59 gaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaa 113  Q
    |||||||| |||||||  | ||| ||| |||||||||||||||||||||||||||    
T  10774543 gaatgagagaaaactcaaataatgtttgtattgatgataaaagtgaatattacaa 10774597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 14618869 - 14618897
Alignment:
Q  176 aactagtatctaacatatatctctaatag 204  Q
    |||||||||||||||||||||||||||||    
T  14618869 aactagtatctaacatatatctctaatag 14618897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 29427477 - 29427400
Alignment:
Q  34 ttaggaaacatgatatccaatgaaggaatgagaaaaaactctgagaatatttctattgatgataaaagtgaatattacaa 113  Q
    |||| ||||||||||| ||| |||||||||||| ||||||   | ||| ||| |||||  ||||||||||||||||||||    
T  29427477 ttagtaaacatgatattcaaggaaggaatgagagaaaacttaaataatgtttgtattg--gataaaagtgaatattacaa 29427400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 183057 - 182936
Alignment:
Q  83 tttctattgatgataaaagtgaatattacaa-tgataagagataccttctaatgaggtggttacatctatatatactactacttgactaatgctaactag 181  Q
    ||||| ||||||||||||||||||||||||| |||   ||  |||||||||||||||||| |||| |||||||||||||||   |||||||||||||| |    
T  183057 tttcttttgatgataaaagtgaatattacaaatgaagtgaagtaccttctaatgaggtggctacaactatatatactactataagactaatgctaacttg 182958  T
Q  182 tatctaacatatatctctaata 203  Q
    ||  |||| | |||||||||||    
T  182957 taagtaacctttatctctaata 182936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University