View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9777_low_5 (Length: 285)
Name: NF9777_low_5
Description: NF9777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9777_low_5 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 16956332 - 16956598
Alignment:
| Q |
1 |
aaataagaccggaaggaatcagaaaattagcggaagctattgtagcagataaactcacnnnnnnngtgtgcattaagaaaatcattttcagataattttc |
100 |
Q |
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| T |
16956332 |
aaataagaccggaaggaatcagaaaattagcggaagctattgtagcagataaactcacaaaaaaagtgtgcattaagaaaatcattttcagataattttc |
16956431 |
T |
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| Q |
101 |
aaattaattaatttaacattttagggtgttaaacaatatatatcatttagcttaagaccaaatccatccgaatggcggaagcgccacatgtgatatatan |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16956432 |
aaattaattaatttaacattttagggtgttaaacaatatatatcatttagcttaagaccaaatccatccgaatggcggaagcgccacatgtgatatatat |
16956531 |
T |
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| Q |
201 |
nnnnnngtgagtgcttattcagttcaaaaaagggagtaccccaagggcacactcttggaggtcacat |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16956532 |
ttttttgtgagtgcttattcagttcaaaaaagggagtaccccaagggcacactcttggaggtcacat |
16956598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 265
Target Start/End: Original strand, 19436087 - 19436132
Alignment:
| Q |
220 |
cagttcaaaaaagggagtaccccaagggcacactcttggaggtcac |
265 |
Q |
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| T |
19436087 |
cagttcacaaaagtgggtaccccaagggcacacccttggaggtcac |
19436132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 265
Target Start/End: Original strand, 19572236 - 19572281
Alignment:
| Q |
220 |
cagttcaaaaaagggagtaccccaagggcacactcttggaggtcac |
265 |
Q |
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| T |
19572236 |
cagttcacaaaagtgggtaccccaagggcacacccttggaggtcac |
19572281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 2240 - 2284
Alignment:
| Q |
222 |
gttcaaaaaagggagtaccccaagggcacactcttggaggtcaca |
266 |
Q |
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| T |
2240 |
gttcacaaaagtgggtaccccaagggcacacccttggaggtcaca |
2284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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