View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9777_low_6 (Length: 278)
Name: NF9777_low_6
Description: NF9777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9777_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 263
Target Start/End: Complemental strand, 11731249 - 11730992
Alignment:
| Q |
6 |
gtttggtgttggttgaagttgaagctgaagctgatctacgaatttgttgaaacaacgattgagaatctttttcatcaaaccctttcaaatcaaatctagc |
105 |
Q |
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| T |
11731249 |
gtttgttgttggttgaagttgaagctgaagctgatctatgaatttgttgaaacaacgattgagaatctttttcatcaaaccctttcaaatcaaatctagc |
11731150 |
T |
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| Q |
106 |
agcaaatccagaaatgttgttagcaacttggttgctacgtgtagtgatgagtattgcacaaccggtaccacaagactcctttaatcgttgctgcaacttc |
205 |
Q |
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| T |
11731149 |
agcaaatccagaaatgttgttagcaacttggttgctacgtgtagtgatgagtattgcacaaccggtaccacaagactcctttaatcgttgctgcaacttc |
11731050 |
T |
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| Q |
206 |
tcgagatcattcttaatctcatttctcaaatcatcaagcacgattagacagtgtttac |
263 |
Q |
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| T |
11731049 |
tcgagatcattcttaatctcatttctcaaatcatcaagcacgattaggcagtgtttac |
11730992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 71 - 263
Target Start/End: Complemental strand, 11730752 - 11730548
Alignment:
| Q |
71 |
tctttttcatcaaaccctttcaaatcaaatctagcagcaaatccagaaatgttgttagcaact------------tggttgctacgtgtagtgatgagta |
158 |
Q |
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| T |
11730752 |
tctttttcatgaaaccctcccaaatcaaatctagcagcaaatccagaaatgttgttagcaaccatgttagcaacatggctgccacgtgtagtgatgagta |
11730653 |
T |
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| Q |
159 |
ttgcacaaccggtaccacaagactcctttaatcgttgctgcaacttctcgagatcattcttaatctcatttctcaaatcatcaagcacgattagacagtg |
258 |
Q |
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| T |
11730652 |
ttgcacaaccggtaccacaagactcctttaatcgttgctgcaaattctcaagatccttcttcatctcattttgcaaaccatcaagcacaattagagggtg |
11730553 |
T |
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| Q |
259 |
tttac |
263 |
Q |
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||||| |
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| T |
11730552 |
tttac |
11730548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 246
Target Start/End: Original strand, 11903083 - 11903193
Alignment:
| Q |
136 |
gttgctacgtgtagtgatgagtattgcacaaccggtaccacaagactcctttaatcgttgctgcaacttctcgagatcattcttaatctcatttctcaaa |
235 |
Q |
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||||||||||||||||||||||||||| |||| |||||| | ||| || ||||| | |||||||| || ||||||| |||||||||| ||| |||| |
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| T |
11903083 |
gttgctacgtgtagtgatgagtattgcccaactggtaccgccagattcagttaatttcttttgcaacttttcaagatcatgcttaatctcaattcgcaaa |
11903182 |
T |
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| Q |
236 |
tcatcaagcac |
246 |
Q |
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||||| ||||| |
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| T |
11903183 |
tcatcgagcac |
11903193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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