View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9777_low_9 (Length: 236)
Name: NF9777_low_9
Description: NF9777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9777_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 43620862 - 43621071
Alignment:
| Q |
17 |
tataatctcgttgtttttgtttcttcttactttgcttctacgagcagaaaaaccattcattcgagcataccaattgtaaaatgtataagccactacaata |
116 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
43620862 |
tataatctcgttgtttttgtttctccttacttttcttctacgagcagaaaaaccattcattcgagcataccaattgtaaaatgcataagccactgcaata |
43620961 |
T |
|
| Q |
117 |
tttgaaaaatgaaacttcgtaacatcacttgcatttaattttttaaaatcaatttttcctatatcttccattcattgaatagcaaatccaaatccaactt |
216 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43620962 |
tttggaaaatgaaacttcataacatcacttgcatttaattttttaaaatcaatttttcctatatcttccattccttgaatagcaaatccaaatccaactt |
43621061 |
T |
|
| Q |
217 |
tcatctcact |
226 |
Q |
| |
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|||| ||||| |
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| T |
43621062 |
tcatatcact |
43621071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 16360741 - 16360532
Alignment:
| Q |
17 |
tataatctcgttgtttttgtttcttcttactttgcttctacgagcagaaaaaccattcattcgagcataccaattgtaaaatgtataagccactacaata |
116 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
16360741 |
tataatctcgttgtttttgtttctccttactttgcttctacgagcagaaaaaccattcattcgagcataccaattataaaatgtataagccactgcaata |
16360642 |
T |
|
| Q |
117 |
tttgaaaaatgaaacttcgtaacatcacttgcatttaattttttaaaatcaatttttcctatatcttccattcattgaatagcaaatccaaatccaactt |
216 |
Q |
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|||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| |
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| T |
16360641 |
tttggaaaatgaaacttcatcacatcacttgcatttaattttttaaaatcaattttccctatatcttccattccttcaatagcaaatccaaatccaactt |
16360542 |
T |
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| Q |
217 |
tcatctcact |
226 |
Q |
| |
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|||| ||||| |
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| T |
16360541 |
tcatatcact |
16360532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 21138216 - 21138269
Alignment:
| Q |
48 |
ttgcttctacgagcagaaaaaccattcattcgagcataccaattgtaaaatgta |
101 |
Q |
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|||||| |||| |||||||| |||| ||||| ||||||||||||||| |||||| |
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| T |
21138216 |
ttgcttttacgggcagaaaatccatgcattctagcataccaattgtagaatgta |
21138269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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