View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_high_1 (Length: 683)
Name: NF9778_high_1
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 3e-99; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 408 - 664
Target Start/End: Complemental strand, 2688104 - 2687847
Alignment:
| Q |
408 |
cctaatgcaatacatcccaatgaaaatcctaatttgctcatcttnnnnnnnnnnnnnn-tgctagaagggttcaacaactagtgataaaatgtgtttttt |
506 |
Q |
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| T |
2688104 |
cctaatgcaatacatcccaatgaaaatcctaatttgcacatcttaaaaaaaaaaaaaaatgctagaagggttcaacaactagtgataaaatgtgtttttt |
2688005 |
T |
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| Q |
507 |
gatatctctatcttgtataccaaacccatcaccatttaaataaagagtatgggcaacacgtgctgcatttcttgcttgattaaaaaatggttccataaaa |
606 |
Q |
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| T |
2688004 |
tatatctcgatcttggataccaaacccatcaccatttaaataaagagtatgggcgacacgtgctgcatttcttgcttgattaaaaaatggttccataaaa |
2687905 |
T |
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| Q |
607 |
gcatcttgattggagcagtgtccattaattcttttccatgcattgcttataatgtctt |
664 |
Q |
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| T |
2687904 |
gcatcttgattggagcagtgtccattaattcttttccatgcattgtttataatgtctt |
2687847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 22 - 181
Target Start/End: Complemental strand, 2696764 - 2696606
Alignment:
| Q |
22 |
caaaagggtgataatgtaaactggaatgggatccctattgctgttagcttttattcttttttgttattgtgctcatcctgttttccctactctctataat |
121 |
Q |
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| T |
2696764 |
caaaagggtgatattgtaaactggagtggaattccaacagctgttagcttgtatgcttttt-gttattgtgcacatcctgttttccctactctctacaat |
2696666 |
T |
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| Q |
122 |
tccatgaggaacaagcaccagttctctaatgcaagtgcctttgctttttattttgggtgt |
181 |
Q |
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| T |
2696665 |
tccatgaggaataaacaccaattctctaatgtaagtgcttctacttttttttttgggtgt |
2696606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 2688983 - 2688854
Alignment:
| Q |
14 |
caaaagggcaaaagggtgataatgtaaactggaatgggatccctattgctgttagcttttattcttttttgttattgtgctcatcctgttttccctactc |
113 |
Q |
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| T |
2688983 |
caaaagggcaaaagagtgatattgtaaattggaatgggatccctactgatgttatcttttattcttttttgt--ttgtgcacatcctgtcttccctactc |
2688886 |
T |
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| Q |
114 |
tctataattccatgaggaacaagcaccagttc |
145 |
Q |
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| T |
2688885 |
tctacaatcccatgaggaacaaacactagttc |
2688854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 2721894 - 2722030
Alignment:
| Q |
22 |
caaaagggtgataatgtaaactggaatgggatccctattgctgttagcttttattcttttttgttattgtgctcatcctgttttccctactctctataat |
121 |
Q |
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| T |
2721894 |
caaaagggtgatattgtaaactggagtggaattccaacagctgttagcttgtatgcttttt-gctattgtgcacatcctgttttccctactctctacaat |
2721992 |
T |
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| Q |
122 |
tccatgaggaacaagcaccagttctctaatgcaagtgc |
159 |
Q |
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| T |
2721993 |
tccatgaggaacaaacaccaattctctaatgtaagtgc |
2722030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 359 - 451
Target Start/End: Complemental strand, 2682654 - 2682562
Alignment:
| Q |
359 |
tcttatcaaataatacaagaatcttttatcattcaaaattccttacatacctaatgcaatacatcccaatgaaaatcctaatttgctcatctt |
451 |
Q |
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| T |
2682654 |
tcttattaaataatacaagaatcttttaccattgaaaattctttcaaatcctaatgcaattcattgcaatgaatatcctaatttgcacatctt |
2682562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 8e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 10838173 - 10838038
Alignment:
| Q |
22 |
caaaagggtgataatgtaaactggaatgggatccctattgctgttagcttttattcttttttgttattgtgctcatcctgttttccctactctctataat |
121 |
Q |
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| T |
10838173 |
caaaagggtgatattgtgaagtggaatgggatacctactgctgttagcttgtatgcttttt-gttattgtgctcatccagttttccctactctttacacc |
10838075 |
T |
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| Q |
122 |
tccatgaggaacaagcaccagttctctaatgcaagtg |
158 |
Q |
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| T |
10838074 |
tccatgaagaacaaacatcaattctctaatgtaagtg |
10838038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 43377855 - 43377808
Alignment:
| Q |
285 |
aacctcggacatcctatttattcatcctaaaagatgaatttctaatca |
332 |
Q |
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| T |
43377855 |
aacctcggacatcctacttattcatcttaaaaagtgaatttctaatca |
43377808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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