View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_high_10 (Length: 476)
Name: NF9778_high_10
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 468
Target Start/End: Original strand, 5083567 - 5084018
Alignment:
| Q |
17 |
agtgaagacatgttggaaattgttgttggtaggattccagagagcttgttatttctaatatccaaaatcctcaacataccaagttgactaatggcatgtg |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5083567 |
agtgaagacatgttggatattgttgttggtaggattccagagagcttgttatttctaatatccaaaatcctcaacataccaagttgactaatggcatgtg |
5083666 |
T |
|
| Q |
117 |
gaatggttcctttgatgaaatttgatttccaatctagatactctaacattgacaagttggatatagattgaggaatagctccaacaatattattatggcc |
216 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| || || | |
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| T |
5083667 |
gaatggttcctttgatgtgatttgatttcaaatttagatattctaacattgacaagttggatatagattgaggaataactccaacaatattgttttgccg |
5083766 |
T |
|
| Q |
217 |
aagatccaagtgttgaagttttgataactctcctatccttgaaggaatttctccaacaaaatcattgttactcaaatccaaccatttcaatctcttcaac |
316 |
Q |
| |
|
|| |||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||| |
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|
| T |
5083767 |
aatatccaattgttgaagttttgataagtcccctatccttgaaggaatttctccaacaaaatcattgttgctcaaattcaacaatttcaatctcttcaac |
5083866 |
T |
|
| Q |
317 |
tgaagtaactcatgtggtaactcaccatggaaactattgcgatgtagatcaagaacagcaaggaaagaaagatttcccaattgaggagaaattgtacctt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||| |
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|
| T |
5083867 |
tgaagtaactcatgtggtaactcaccatggaaactatttccttgtagatcaagaaatacaaggaaagagagatttcccaattgaggggaaattgtacctt |
5083966 |
T |
|
| Q |
417 |
caaggtacatattactaagattcaatgcatttactcttccatgatgtccatc |
468 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
5083967 |
caaggtccatgttactaagattcaatgcatttactcttccatgatgttcatc |
5084018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 468
Target Start/End: Complemental strand, 5111504 - 5111053
Alignment:
| Q |
17 |
agtgaagacatgttggaaattgttgttggtaggattccagagagcttgttatttctaatatccaaaatcctcaacataccaagttgactaatggcatgtg |
116 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
5111504 |
agtgaagacatgttggatattgttgttggtaggattccacagagcttgttatttctaatatccaaaatcctcaacataccaagttgaccaatggcatgtg |
5111405 |
T |
|
| Q |
117 |
gaatggttcctttgatgaaatttgatttccaatctagatactctaacattgacaagttggatatagattgaggaatagctccaacaatattattatggcc |
216 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| | |
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|
| T |
5111404 |
gaatggttcctttgatgaaatttgtactcaaatctaggtaccgtaacattgacaagtcggatatagattgaggaatagctccaacaaaattattaaagta |
5111305 |
T |
|
| Q |
217 |
aagatccaagtgttgaagttttgataactctcctatccttgaaggaatttctccaacaaaatcattgttactcaaatccaaccatttcaatctcttcaac |
316 |
Q |
| |
|
||||||||| || |||||||||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
5111304 |
aagatccaaatgatgaagttttgctaagtcccctatccttgaaggaatttctccaacaaaatcattgtcactcaaatccaaccatttcaatctcttcaac |
5111205 |
T |
|
| Q |
317 |
tgaagtaactcatgtggtaactcaccatggaaactattgcgatgtagatcaagaacagcaaggaaagaaagatttcccaattgaggagaaattgtacctt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5111204 |
tgaagtaactcatgtggtaactcaccatagaaactattgccttgtaaatcaagaacaacaaggaaagaaagatttcccaattgaggagaaattgtacctt |
5111105 |
T |
|
| Q |
417 |
caaggtacatattactaagattcaatgcatttactcttccatgatgtccatc |
468 |
Q |
| |
|
|||||| ||| ||| |||||| ||||||||| ||||||||||||||| |||| |
|
|
| T |
5111104 |
caaggtccatgttattaagatccaatgcattcactcttccatgatgttcatc |
5111053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 468
Target Start/End: Complemental strand, 5094494 - 5094050
Alignment:
| Q |
17 |
agtgaagacatgttggaaattgttgttggtaggattccagagagct---tgttatttctaatatccaaaatcctcaacataccaagttgactaatggcat |
113 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||| ||| ||||||| | |||| |||| ||||||| || |||||||| ||| |||| |
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|
| T |
5094494 |
agtgaagacatgttgcaaattgttgttggtatcattccagacagcaacctgttattaccaatactcaaatacctcaactgacgaagttgaccaattgcat |
5094395 |
T |
|
| Q |
114 |
gtggaatggttcctttgatgaaatttgatttccaatctagatactctaacattgacaagttggatatagattgaggaatagctccaacaatattattatg |
213 |
Q |
| |
|
|||||||||||||||||||| || || |||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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|
| T |
5094394 |
gtggaatggttcctttgatg----------tcaaacgtagatattctaacattgacaagttgaatatagattgaggaataactccaacaatattattata |
5094305 |
T |
|
| Q |
214 |
gccaagatccaagtgttgaagttttgataactctcctatccttgaaggaatttctccaacaaaatcattgttactcaaatccaaccatttcaatctcttc |
313 |
Q |
| |
|
|| || |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| |||| |||||||||| ||| |
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|
| T |
5094304 |
gctaatatccaattgttgaagttttgataactcccctatccttgaaggaatttctccaacaaaatcattgttgcttaaattcaacaatttcaatcttttc |
5094205 |
T |
|
| Q |
314 |
aactgaagtaactcatgtggtaactcaccatggaaactattgcgatgtagatcaagaacagcaaggaaagaaagatttcccaattgaggagaaattgtac |
413 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
5094204 |
aactgaagcaactcatgtggtaactcaccatggaaactattgccctgtaaatcaagaacaataaggaaagaaagatttcccaattgaggagaaattgtac |
5094105 |
T |
|
| Q |
414 |
cttcaaggtacatattactaagattcaatgcatttactcttccatgatgtccatc |
468 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
5094104 |
cttcaaggcccatgctactaagattcaatgcatttactcttccatggtgttcatc |
5094050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 260 - 468
Target Start/End: Original strand, 14427589 - 14427800
Alignment:
| Q |
260 |
ggaatttctccaacaaaatcattgttactcaaatccaaccatttcaatctctt---caactgaagtaactcatgtggtaactcaccatggaaactattgc |
356 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||||| || ||| |||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
14427589 |
ggaatttctccaacaaaatcattgttgctcaaatccaacattttcaatctattatgcaattgaaataactcatgtggtaactcaccatggaaactattgc |
14427688 |
T |
|
| Q |
357 |
gatgtagatcaagaacagcaaggaaagaaagatttcccaattgaggagaaattgtaccttcaaggtacatattactaagattcaatgcatttactcttcc |
456 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
14427689 |
catgtagatcaagaacaacaaggaaagagagatttcctaattgaggagaaatgttaccttcaaggcccatgttactaagattcaatgcatttactcttcc |
14427788 |
T |
|
| Q |
457 |
atgatgtccatc |
468 |
Q |
| |
|
||||||| |||| |
|
|
| T |
14427789 |
atgatgttcatc |
14427800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 259 - 419
Target Start/End: Complemental strand, 16873519 - 16873359
Alignment:
| Q |
259 |
aggaatttctccaacaaaatcattgttactcaaatccaaccatttcaatctcttcaactgaagtaactcatgtggtaactcaccatggaaactattgcga |
358 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || || | |||| ||||| || ||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
16873519 |
aggaatttctccaacaaaatcattgtagctcaagtctaatctcttcagtctctgcagatgaagtaactcttgtggaaactcaccatggaaactattgcct |
16873420 |
T |
|
| Q |
359 |
tgtagatcaagaacagcaaggaaagaaagatttcccaattgaggagaaattgtaccttcaa |
419 |
Q |
| |
|
||||| ||||||| | |||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
16873419 |
tgtaggtcaagaataacaaggaaagagagatttcccaattgagaggaaattgtaccttcaa |
16873359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 411 - 462
Target Start/End: Complemental strand, 16872553 - 16872502
Alignment:
| Q |
411 |
taccttcaaggtacatattactaagattcaatgcatttactcttccatgatg |
462 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
16872553 |
taccttcaagtcccatattactaagattcaatgcctttactcttccatgatg |
16872502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 16873578 - 16873503
Alignment:
| Q |
124 |
tcctttgatgaaatttgatttccaatctagatactctaacattgacaagttggatatagattgaggaatagctccaacaa |
203 |
Q |
| |
|
||||||||||| ||||||| | ||||||| |||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
16873578 |
tcctttgatgagatttgatcttaaatctaggtactctaacattgacaagttgg----agattgaggaatttctccaacaa |
16873503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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