View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9778_high_12 (Length: 459)

Name: NF9778_high_12
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9778_high_12
NF9778_high_12
[»] chr2 (62 HSPs)
chr2 (1-459)||(38792308-38792766)
chr2 (247-442)||(39473931-39474126)
chr2 (237-378)||(38792649-38792790)
chr2 (267-424)||(39136522-39136679)
chr2 (231-339)||(39136859-39136967)
chr2 (238-315)||(38793217-38793294)
chr2 (115-322)||(38792567-38792790)
chr2 (282-422)||(39422178-39422318)
chr2 (353-422)||(39152141-39152210)
chr2 (245-326)||(39415769-39415850)
chr2 (245-325)||(39390580-39390660)
chr2 (237-356)||(38792923-38793042)
chr2 (128-199)||(39136877-39136948)
chr2 (245-324)||(39221679-39221758)
chr2 (274-457)||(39487872-39488055)
chr2 (128-192)||(39221689-39221753)
chr2 (128-192)||(39390585-39390649)
chr2 (125-205)||(39415519-39415599)
chr2 (1-88)||(39390596-39390683)
chr2 (245-320)||(39451714-39451789)
chr2 (22-112)||(39422178-39422268)
chr2 (371-457)||(39458417-39458503)
chr2 (246-307)||(39137302-39137363)
chr2 (13-106)||(39415161-39415254)
chr2 (107-199)||(39415753-39415845)
chr2 (3-94)||(38792925-38793016)
chr2 (7-118)||(39136568-39136679)
chr2 (1-76)||(39136862-39136937)
chr2 (129-192)||(39192629-39192692)
chr2 (129-192)||(39198309-39198372)
chr2 (237-323)||(39192615-39192701)
chr2 (237-323)||(39198295-39198381)
chr2 (245-323)||(39390160-39390238)
chr2 (245-307)||(39390370-39390432)
chr2 (353-410)||(39416129-39416186)
chr2 (132-192)||(39390169-39390229)
chr2 (128-188)||(39390375-39390435)
chr2 (128-187)||(39137300-39137359)
chr2 (42-113)||(39152190-39152261)
chr2 (133-192)||(39222319-39222378)
chr2 (7-94)||(39415281-39415368)
chr2 (1-76)||(39415785-39415860)
chr2 (108-199)||(39458721-39458812)
chr2 (228-326)||(39415500-39415598)
chr2 (1-94)||(38793178-38793271)
chr2 (140-193)||(38793217-38793270)
chr2 (273-326)||(39415161-39415214)
chr2 (128-189)||(39473934-39473995)
chr2 (108-200)||(38792957-38793049)
chr2 (1-77)||(39221666-39221742)
chr2 (136-200)||(39415146-39415210)
chr2 (240-320)||(39451462-39451542)
chr2 (237-292)||(39222551-39222606)
chr2 (141-200)||(39389758-39389817)
chr2 (245-342)||(39222291-39222388)
chr2 (48-113)||(39458543-39458608)
chr2 (228-305)||(39602969-39603046)
chr2 (247-292)||(39603192-39603237)
chr2 (151-199)||(39161446-39161494)
chr2 (151-199)||(39207700-39207748)
chr2 (2-118)||(39473946-39474062)
chr2 (106-190)||(39602962-39603046)
[»] chr7 (5 HSPs)
chr7 (265-455)||(19806852-19807042)
chr7 (247-326)||(19807233-19807312)
chr7 (128-199)||(19807238-19807309)
chr7 (1-76)||(19807223-19807298)
chr7 (5-118)||(19806929-19807042)
[»] chr5 (3 HSPs)
chr5 (373-457)||(17059049-17059133)
chr5 (262-312)||(33560198-33560248)
chr5 (140-190)||(33560198-33560248)


Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 62)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 38792766 - 38792308
Alignment:
Q  1 cttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaaaagcttctgtttcaatacaaaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38792766 cttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcgaaaagcttctgtttcaatacaaaatc 38792667  T
Q  101 attcaccagctccgtcacatgatctttaaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaagttccttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38792666 attcaccagctccgtcacatgatctttaaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctctttcgactcaagttccttc 38792567  T
Q  201 gttctgatttaataccaaaatcagtcaccagctctatcacttgaccttcaaattctctcgtttttgattcatgctccttcacccggccttcatgctgctt 300  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38792566 gttctgatttaatacc-aaatcagtcaccagctctatcacttgaccttcaaattctctcgtttttgattcatgctccttcacccgaccttcatgctgctt 38792468  T
Q  301 ctcttttaactcaaggtccttcattccgctctcgaactgcttttgtctca--acaccaaatcattcaccagctccttcacttggctttccaaatgcttct 398  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38792467 ctcttttaactcaaggtccttcattccgctctcaaactgcttttgtctcaacacaccaaatcattcaccagctccttcacttggctttccaaatgcttct 38792368  T
Q  399 gttttgaaatgtcatccatgacttgataaagctccttctcttttttctcaagttcttgcct 459  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38792367 g-tttgaaatgtcatccatgacttgataaagctccttctcttttttctcaagttcttgcct 38792308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 247 - 442
Target Start/End: Original strand, 39473931 - 39474126
Alignment:
Q  247 ttcaaattctctcgtttttgattcatgctccttcacccggccttcatgctgcttctcttttaactcaaggtccttcattccgctctcgaactgcttttgt 346  Q
    |||||||||||||  |||||||| |||||||| ||| ||||| ||| |||||||||||||| ||| ||| | || ||| | ||| || || ||||| |||    
T  39473931 ttcaaattctctctgttttgatttatgctcctccactcggccatcaagctgcttctcttttgacttaagcttctccatgcggctttcaaaatgcttctgt 39474030  T
Q  347 ctcaacaccaaatcattcaccagctccttcacttggctttccaaatgcttctgttttgaaatgtcatccatgacttgataaagctccttctctttt 442  Q
     |  | |||||||||||||| |||||||||||||||||||| || | ||||||||||||||||| ||||||||||||| |||| ||| | ||||||    
T  39474031 tttgataccaaatcattcactagctccttcacttggctttcaaattccttctgttttgaaatgttatccatgacttgacaaagttccatatctttt 39474126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 237 - 378
Target Start/End: Complemental strand, 38792790 - 38792649
Alignment:
Q  237 tcacttgaccttcaaattctctcgtttttgattcatgctccttcacccggccttcatgctgcttctcttttaactcaaggtccttcattccgctctcgaa 336  Q
    |||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||  ||||| |||||  |||||||||||||||||| | | |||||    
T  38792790 tcacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcgaa 38792691  T
Q  337 ctgcttttgtctcaacaccaaatcattcaccagctccttcac 378  Q
      |||| ||| |||| || |||||||||||||||||| ||||    
T  38792690 aagcttctgtttcaatacaaaatcattcaccagctccgtcac 38792649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 267 - 424
Target Start/End: Complemental strand, 39136679 - 39136522
Alignment:
Q  267 attcatgctccttcacccggccttcatgctgcttctcttttaactcaaggtccttcattccgctctcgaactgcttttgtctcaacaccaaatcattcac 366  Q
    |||||||||||||||  ||||||||| | ||| |||||||  ||||||| ||||| ||   ||| ||||| ||||| ||| |  | ||||||||||||||    
T  39136679 attcatgctccttcaatcggccttcaagttgcctctctttcgactcaagctccttaatatggctttcgaaatgcttctgttttgataccaaatcattcac 39136580  T
Q  367 cagctccttcacttggctttccaaatgcttctgttttgaaatgtcatccatgacttga 424  Q
    |||||||||||||||||||||||| | ||| ||||||||||||| |||||||||||||    
T  39136579 cagctccttcacttggctttccaattccttttgttttgaaatgttatccatgacttga 39136522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 231 - 339
Target Start/End: Complemental strand, 39136967 - 39136859
Alignment:
Q  231 gctctatcacttgaccttcaaattctctcgtttttgattcatgctccttcacccggccttcatgctgcttctcttttaactcaaggtccttcattccgct 330  Q
    |||| |||||||| | |||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| | |    
T  39136967 gctccatcacttggctttcaaattctctctcttttgatgcatgctccttcacccggccttcatgctgcttctcttttgactcaagctccttgattcggtt 39136868  T
Q  331 ctcgaactg 339  Q
    ||| |||||    
T  39136867 ctcaaactg 39136859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 238 - 315
Target Start/End: Complemental strand, 38793294 - 38793217
Alignment:
Q  238 cacttgaccttcaaattctctcgtttttgattcatgctccttcacccggccttcatgctgcttctcttttaactcaag 315  Q
    ||||| ||||||||||||||| | |||| ||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  38793294 cactttaccttcaaattctctagcttttaattcatgctccttcacccgaccttcatgttgcttctcttttaactcaag 38793217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 115 - 322
Target Start/End: Complemental strand, 38792790 - 38792567
Alignment:
Q  115 tcacatgatctttaaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaagttccttc-------------- 200  Q
    |||| ||| ||| ||||||||||| ||||||||| ||||||| |||| ||||||||| |||||| ||||| |||||||| ||||||                  
T  38792790 tcacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcgaa 38792691  T
Q  201 ---gttctgatttaataccaaaatcagtcaccagctctatcacttgaccttcaaattctctcgtttttgattcatgctccttcacccggccttcatgctg 297  Q
        ||||| || |||| |||||||| ||||||||||  |||| ||| ||| |||||||||| |||||||||||||||||| |||| |||||||||| ||    
T  38792690 aagcttctgtttcaata-caaaatcattcaccagctccgtcacatgatctttaaattctctcttttttgattcatgctcctccacctggccttcatgttg 38792592  T
Q  298 cttctcttttaactcaaggtccttc 322  Q
    |||||||||  ||||||| ||||||    
T  38792591 cttctctttcgactcaagttccttc 38792567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 282 - 422
Target Start/End: Original strand, 39422178 - 39422318
Alignment:
Q  282 cccggccttcatgctgcttctcttttaactcaaggtccttcattccgctctcgaactgcttttgtctcaacaccaaatcattcaccagctccttcacttg 381  Q
    ||||||| ||| | |||||||||||  |||||||||||||||||| ||| || || ||||| ||| |  | |||||||||||| |||||||   || |||    
T  39422178 cccggccatcaagttgcttctctttagactcaaggtccttcattcggctttcaaattgcttctgttttgataccaaatcattctccagctcggccaattg 39422277  T
Q  382 gctttccaaatgcttctgttttgaaatgtcatccatgactt 422  Q
    || |||||| | |||||||||||||||||||||||||||||    
T  39422278 gccttccaattccttctgttttgaaatgtcatccatgactt 39422318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 422
Target Start/End: Complemental strand, 39152210 - 39152141
Alignment:
Q  353 accaaatcattcaccagctccttcacttggctttccaaatgcttctgttttgaaatgtcatccatgactt 422  Q
    ||||||||||||||||||||||| ||||||||||| || | ||||||||||||||||| |||||||||||    
T  39152210 accaaatcattcaccagctcctttacttggctttcaaattccttctgttttgaaatgttatccatgactt 39152141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 39415769 - 39415850
Alignment:
Q  245 ccttcaaattctctcgtttttgattcatgctccttcacccggccttcatgctgcttctcttttaactcaaggtccttcattc 326  Q
    |||||||||||||||  ||||||| ||||||| |||||||||||||||||||||||||||||| | ||||| ||||| ||||    
T  39415769 ccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattcaagctccttgattc 39415850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 245 - 325
Target Start/End: Original strand, 39390580 - 39390660
Alignment:
Q  245 ccttcaaattctctcgtttttgattcatgctccttcacccggccttcatgctgcttctcttttaactcaaggtccttcatt 325  Q
    |||||||||||||||  ||||||||||||||||||||| |||| |||||| |||||||||||| ||||||  |||||||||    
T  39390580 ccttcaaattctctctcttttgattcatgctccttcactcggctttcatgttgcttctcttttgactcaaactccttcatt 39390660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 237 - 356
Target Start/End: Complemental strand, 38793042 - 38792923
Alignment:
Q  237 tcacttgaccttcaaattctctcgtttttgattcatgctccttcacccggccttcatgctgcttctcttttaactcaaggtccttcattccgctctcgaa 336  Q
    ||||||||||||||||||||| | | ||||| ||||||||||||| |||| ||||||  || |||||||| |||||||| |||||||||  ||| |||||    
T  38793042 tcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggctttcgaa 38792943  T
Q  337 ctgcttttgtctcaacacca 356  Q
     ||||| ||| |||| ||||    
T  38792942 atgcttctgtttcaatacca 38792923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 39136948 - 39136877
Alignment:
Q  128 aaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaagttcctt 199  Q
    ||||||||||| ||||||| ||||||||| |||| |||||||||| |||||||||||||||||||| |||||    
T  39136948 aaattctctctcttttgatgcatgctccttcacccggccttcatgctgcttctcttttgactcaagctcctt 39136877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 324
Target Start/End: Complemental strand, 39221758 - 39221679
Alignment:
Q  245 ccttcaaattctctcgtttttgattcatgctccttcacccggccttcatgctgcttctcttttaactcaaggtccttcat 324  Q
    |||||||||||||||  ||||||| ||||||||||||||| ||||||||| |||||||||||| ||||||  ||||||||    
T  39221758 ccttcaaattctctctcttttgatccatgctccttcacccagccttcatgttgcttctcttttgactcaaactccttcat 39221679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 274 - 457
Target Start/End: Original strand, 39487872 - 39488055
Alignment:
Q  274 ctccttcacccggccttcatgctgcttctcttttaactcaaggtccttcattccgctctcgaactgcttttgtctcaacaccaaatcattcaccagctcc 373  Q
    ||||||||  ||||| ||| | |||||||||||| ||||||  || ||| ||| | | || || || || ||||| || | |||||||||||||||||||    
T  39487872 ctccttcattcggccatcaagttgcttctcttttgactcaatctcattcgttcggttttcaaaatggttatgtctgaataacaaatcattcaccagctcc 39487971  T
Q  374 ttcacttggctttccaaatgcttctgttttgaaatgtcatccatgacttgataaagctccttctcttttttctcaagttcttgc 457  Q
    ||||  |||||||| || | ||||||||||||||||| ||||||||||| |  ||| ||| |||||||| | || |||||||||    
T  39487972 ttcatctggctttcaaatttcttctgttttgaaatgttatccatgacttcacgaagttccgtctcttttgtatcgagttcttgc 39488055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 39221753 - 39221689
Alignment:
Q  128 aaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaa 192  Q
    ||||||||||| ||||||| ||||||||| ||||  |||||||||||||||||||||||||||||    
T  39221753 aaattctctctcttttgatccatgctccttcacccagccttcatgttgcttctcttttgactcaa 39221689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 39390585 - 39390649
Alignment:
Q  128 aaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaa 192  Q
    ||||||||||| ||||||||||||||||| |||  ||| ||||||||||||||||||||||||||    
T  39390585 aaattctctctcttttgattcatgctccttcactcggctttcatgttgcttctcttttgactcaa 39390649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 39415519 - 39415599
Alignment:
Q  125 tttaaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaagttccttcgttct 205  Q
    |||||||||||||| ||||||||||  ||||| ||| || |||||||||||||||||||||| |||||| |||||| ||||    
T  39415519 tttaaattctctctcttttgattcacactccttcacttgaccttcatgttgcttctcttttgcctcaagctccttcattct 39415599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 39390596 - 39390683
Alignment:
Q  1 cttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaaaagcttctgttt 88  Q
    |||||||||| ||||||||||| |||| ||||| |||||| ||||| |||||||  ||||||||| || |||||||| ||||||||||    
T  39390596 cttttgattcatgctccttcactcggctttcatgttgcttctcttttgactcaaactccttcatttggctttcaaaatgcttctgttt 39390683  T

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Target: chr2; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 39451789 - 39451714
Alignment:
Q  245 ccttcaaattctctcgtttttgattcatgctccttcacccggccttcatgctgcttctcttttaactcaaggtcct 320  Q
    |||||||||||||||  |||||||||||||||| |||||||||| ||||| ||| |||| ||||| ||||||||||    
T  39451789 ccttcaaattctctcacttttgattcatgctccatcacccggccctcatgttgcctctcatttaagtcaaggtcct 39451714  T

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Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 39422178 - 39422268
Alignment:
Q  22 cccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaaaagcttctgtttcaatacaaaatcattcaccagctc 112  Q
    ||||||| |||  |||||| ||||| ||||||||||||||||||||| |||||||  ||||||||||  |||| ||||||||| |||||||    
T  39422178 cccggccatcaagttgcttctctttagactcaaggtccttcattcggctttcaaattgcttctgttttgataccaaatcattctccagctc 39422268  T

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Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 371 - 457
Target Start/End: Complemental strand, 39458503 - 39458417
Alignment:
Q  371 tccttcacttggctttccaaatgcttctgttttgaaatgtcatccatgacttgataaagctccttctcttttttctcaagttcttgc 457  Q
    ||||||||||| ||||| |||||||||||||||||||||| |||| ||||||||| ||| ||  |||||||| |||  |||||||||    
T  39458503 tccttcacttgtctttcaaaatgcttctgttttgaaatgttatccttgacttgatgaagttctatctcttttgtcttgagttcttgc 39458417  T

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Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 39137363 - 39137302
Alignment:
Q  246 cttcaaattctctcgtttttgattcatgctccttcacccggccttcatgctgcttctctttt 307  Q
    ||||||||||||||  |||||||||||||||| |||||||||||||||| || |||||||||    
T  39137363 cttcaaattctctcacttttgattcatgctccatcacccggccttcatgttgtttctctttt 39137302  T

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Target: chr2; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 39415161 - 39415254
Alignment:
Q  13 gctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaaaagcttctgtttcaatacaaaatcattcac 106  Q
    |||||||||| || ||||||| |||||| ||||| |||||||| |||||||||||| |||||||| | ||| ||||  |||| |||||||||||    
T  39415161 gctccttcactcgaccttcatgttgcttctcttttgactcaagctccttcattcggctttcaaaatgattcagttttgataccaaatcattcac 39415254  T

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Target: chr2; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 107 - 199
Target Start/End: Original strand, 39415753 - 39415845
Alignment:
Q  107 cagctccgtcacatgatctttaaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaagttcctt 199  Q
    ||||||| |||| ||  ||| ||||||||||| ||||||| ||||||| | |||| |||||||||| |||||||||||||| ||||| |||||    
T  39415753 cagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattcaagctcctt 39415845  T

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Target: chr2; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 38793016 - 38792925
Alignment:
Q  3 tttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaaaagcttctgtttcaatac 94  Q
    ||||| || |||||||||| |||| |||||| ||| || |||||| ||||||| ||||||||| || |||| ||| ||||||||||||||||    
T  38793016 tttgagtcatgctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaatac 38792925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 39136679 - 39136568
Alignment:
Q  7 attcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaaaagcttctgtttcaatacaaaatcattcac 106  Q
    |||| ||||||||||  |||||||||  |||| | |||||||||||||| ||||| ||  || |||| ||| ||||||||||  |||| |||||||||||    
T  39136679 attcatgctccttcaatcggccttcaagttgcctctctttcgactcaagctccttaatatggctttcgaaatgcttctgttttgataccaaatcattcac 39136580  T
Q  107 cagctccgtcac 118  Q
    ||||||| ||||    
T  39136579 cagctccttcac 39136568  T

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Target: chr2; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 39136937 - 39136862
Alignment:
Q  1 cttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaa 76  Q
    |||||||| | ||||||||||||||||||||||  ||||| ||||| |||||||| ||||| |||||||| |||||    
T  39136937 cttttgatgcatgctccttcacccggccttcatgctgcttctcttttgactcaagctccttgattcggttctcaaa 39136862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 39192629 - 39192692
Alignment:
Q  129 aattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaa 192  Q
    |||||||||| |||||||||| |||||| ||| ||| ||||||| |||||||||||||||||||    
T  39192629 aattctctctcttttgattcacgctccttcacttggacttcatgatgcttctcttttgactcaa 39192692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 39198309 - 39198372
Alignment:
Q  129 aattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaa 192  Q
    |||||||||| |||||||||| |||||| ||| ||| ||||||| |||||||||||||||||||    
T  39198309 aattctctctcttttgattcacgctccttcacttggacttcatgatgcttctcttttgactcaa 39198372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 237 - 323
Target Start/End: Original strand, 39192615 - 39192701
Alignment:
Q  237 tcacttgaccttcaaattctctcgtttttgattcatgctccttcacccggccttcatgctgcttctcttttaactcaaggtccttca 323  Q
    ||||||| ||||| |||||||||  |||||||||| ||||||||||  || ||||||| |||||||||||| ||||||  |||||||    
T  39192615 tcacttggccttcgaattctctctcttttgattcacgctccttcacttggacttcatgatgcttctcttttgactcaaactccttca 39192701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 237 - 323
Target Start/End: Original strand, 39198295 - 39198381
Alignment:
Q  237 tcacttgaccttcaaattctctcgtttttgattcatgctccttcacccggccttcatgctgcttctcttttaactcaaggtccttca 323  Q
    ||||||| ||||| |||||||||  |||||||||| ||||||||||  || ||||||| |||||||||||| ||||||  |||||||    
T  39198295 tcacttggccttcgaattctctctcttttgattcacgctccttcacttggacttcatgatgcttctcttttgactcaaactccttca 39198381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 323
Target Start/End: Original strand, 39390160 - 39390238
Alignment:
Q  245 ccttcaaattctctcgtttttgattcatgctccttcacccggccttcatgctgcttctcttttaactcaaggtccttca 323  Q
    |||||||| ||||||  ||| ||||||||||||||||| |||| |||||| |||||||||||| ||||||  |||||||    
T  39390160 ccttcaaaatctctctctttggattcatgctccttcactcggctttcatgttgcttctcttttgactcaaaatccttca 39390238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 39390370 - 39390432
Alignment:
Q  245 ccttcaaattctctcgtttttgattcatgctccttcacccggccttcatgctgcttctctttt 307  Q
    |||||||||||||||  ||||||| ||||||||||||| |||| |||||| ||||||||||||    
T  39390370 ccttcaaattctctctcttttgatccatgctccttcactcggctttcatgttgcttctctttt 39390432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 410
Target Start/End: Original strand, 39416129 - 39416186
Alignment:
Q  353 accaaatcattcaccagctccttcacttggctttccaaatgcttctgttttgaaatgt 410  Q
    |||||||||||| | |||||||||||||||||||| || | |||||||||||||||||    
T  39416129 accaaatcattccctagctccttcacttggctttcaaattccttctgttttgaaatgt 39416186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 39390169 - 39390229
Alignment:
Q  132 tctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaa 192  Q
    ||||||| ||| ||||||||||||| |||  ||| ||||||||||||||||||||||||||    
T  39390169 tctctctctttggattcatgctccttcactcggctttcatgttgcttctcttttgactcaa 39390229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 39390375 - 39390435
Alignment:
Q  128 aaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgac 188  Q
    ||||||||||| ||||||| ||||||||| |||  ||| ||||||||||||||||||||||    
T  39390375 aaattctctctcttttgatccatgctccttcactcggctttcatgttgcttctcttttgac 39390435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 39137359 - 39137300
Alignment:
Q  128 aaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttga 187  Q
    ||||||||||  ||||||||||||||||  |||| ||||||||||||| |||||||||||    
T  39137359 aaattctctcacttttgattcatgctccatcacccggccttcatgttgtttctcttttga 39137300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 39152261 - 39152190
Alignment:
Q  42 tctttcgactcaaggtccttcattcggttttcaaaaagcttctgtttcaatacaaaatcattcaccagctcc 113  Q
    ||||| |||||||| ||||| || ||| |||||||| ||||||||||  |||| ||||||||||||||||||    
T  39152261 tctttagactcaagttccttaatccggctttcaaaatgcttctgtttggataccaaatcattcaccagctcc 39152190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 39222378 - 39222319
Alignment:
Q  133 ctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaa 192  Q
    |||||| |||||||| |||||||| ||| ||||||||| ||||||||||||| |||||||    
T  39222378 ctctctcttttgatttatgctccttcacttggccttcaagttgcttctctttagactcaa 39222319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 39415281 - 39415368
Alignment:
Q  7 attcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaaaagcttctgtttcaatac 94  Q
    |||| ||||||||||  ||| |||||| ||||||| ||||||||||||| || |||| | || |||| ||| ||||||||||||||||    
T  39415281 attcatgctccttcaatcggacttcatcttgctttgctttcgactcaagctctttcacttggctttctaaatgcttctgtttcaatac 39415368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 39415785 - 39415860
Alignment:
Q  1 cttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaa 76  Q
    |||||||| | ||||| ||||||||||||||||  ||||| ||||| || ||||| ||||| ||||||||||||||    
T  39415785 cttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattcaagctccttgattcggttttcaaa 39415860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 39458812 - 39458721
Alignment:
Q  108 agctccgtcacatgatctttaaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaagttcctt 199  Q
    |||||| |||||||  |||  |||||||||||||||||||||||  | ||| |  |||| ||| ||||||||||||| ||||||||||||||    
T  39458812 agctccttcacatggccttcgaattctctcttttttgattcatgtacttcccctcggccatcaagttgcttctctttagactcaagttcctt 39458721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 326
Target Start/End: Original strand, 39415500 - 39415598
Alignment:
Q  228 ccagctctatcacttgaccttcaaattctctcgtttttgattcatgctccttcacccggccttcatgctgcttctcttttaactcaaggtccttcattc 326  Q
    |||||||  ||||||| | || ||||||||||  ||||||||||  |||||||||  | |||||||| ||||||||||||  |||||| ||||||||||    
T  39415500 ccagctccctcacttggcttttaaattctctctcttttgattcacactccttcacttgaccttcatgttgcttctcttttgcctcaagctccttcattc 39415598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 38793271 - 38793178
Alignment:
Q  1 cttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaaaagcttctgtttcaatac 94  Q
    ||||| |||| |||||||||||||| ||||||| |||||| |||||  |||||||   |||||| ||| ||||||||  ||||| |||||||||    
T  38793271 cttttaattcatgctccttcacccgaccttcatgttgcttctcttttaactcaagcatcttcatccggctttcaaaacacttctttttcaatac 38793178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 38793270 - 38793217
Alignment:
Q  140 ttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaag 193  Q
    |||| |||||||||||| |||| | ||||||||||||||||||||| |||||||    
T  38793270 ttttaattcatgctccttcacccgaccttcatgttgcttctcttttaactcaag 38793217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 273 - 326
Target Start/End: Original strand, 39415161 - 39415214
Alignment:
Q  273 gctccttcacccggccttcatgctgcttctcttttaactcaaggtccttcattc 326  Q
    |||||||||| || |||||||| |||||||||||| ||||||| ||||||||||    
T  39415161 gctccttcactcgaccttcatgttgcttctcttttgactcaagctccttcattc 39415214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 39473934 - 39473995
Alignment:
Q  128 aaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgact 189  Q
    ||||||||||| |||||||| ||||||||||||  |||| ||| | ||||||||||||||||    
T  39473934 aaattctctctgttttgatttatgctcctccactcggccatcaagctgcttctcttttgact 39473995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 200
Target Start/End: Complemental strand, 38793049 - 38792957
Alignment:
Q  108 agctccgtcacatgatctttaaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaagttccttc 200  Q
    |||||| |||| ||| ||| |||||||| ||| ||||| |||||||||| || | || |||||| ||| ||||||||  ||||||||||||||    
T  38793049 agctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctttcaactcaagttccttc 38792957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 39221742 - 39221666
Alignment:
Q  1 cttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaaa 77  Q
    |||||||| | ||||||||||||| |||||||| |||||| ||||| |||||||  ||||||||  || ||||||||    
T  39221742 cttttgatccatgctccttcacccagccttcatgttgcttctcttttgactcaaactccttcatctggctttcaaaa 39221666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 39415146 - 39415210
Alignment:
Q  136 tcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaagttccttc 200  Q
    |||||| ||||||  |||||| |||  | ||||||||||||||||||||||||||||| ||||||    
T  39415146 tcttttctgattccagctccttcactcgaccttcatgttgcttctcttttgactcaagctccttc 39415210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #52
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 320
Target Start/End: Complemental strand, 39451542 - 39451462
Alignment:
Q  240 cttgaccttcaaattctctcgtttttgattcatgctccttcacccggccttcatgctgcttctcttttaactcaaggtcct 320  Q
    |||| |||||||| |||||   |||||||||||||||||||| ||||| |||| | |||||||| ||| | ||||||||||    
T  39451542 cttggccttcaaactctctttcttttgattcatgctccttcaaccggctttcaagttgcttctcatttgagtcaaggtcct 39451462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #53
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 39222606 - 39222551
Alignment:
Q  237 tcacttgaccttcaaattctctcgtttttgattcatgctccttcacccggccttca 292  Q
    ||||||||  |||||||||||||  ||||||||||||||||||||  |||||||||    
T  39222606 tcacttgaatttcaaattctctctcttttgattcatgctccttcattcggccttca 39222551  T

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Target: chr2; HSP #54
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 39389758 - 39389817
Alignment:
Q  141 tttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaagttccttc 200  Q
    |||||||||||||||| ||  ||| ||||| |||||||| ||||||||||||| ||||||    
T  39389758 tttgattcatgctcctgcaattggtcttcaagttgcttcccttttgactcaagctccttc 39389817  T

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Target: chr2; HSP #55
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 342
Target Start/End: Complemental strand, 39222388 - 39222291
Alignment:
Q  245 ccttcaaattctctcgtttttgattcatgctccttcacccggccttcatgctgcttctcttttaactcaaggtccttcattccgctctcgaactgctt 342  Q
    ||||| ||| |||||  |||||||| ||||||||||||  |||||||| | |||||||||||  ||||||  |||||||||  ||| ||||| |||||    
T  39222388 ccttcgaatcctctctcttttgatttatgctccttcacttggccttcaagttgcttctctttagactcaaactccttcatttggctttcgaaatgctt 39222291  T

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Target: chr2; HSP #56
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 39458608 - 39458543
Alignment:
Q  48 gactcaaggtccttcattcggttttcaaaaagcttctgtttcaatacaaaatcattcaccagctcc 113  Q
    |||||||| |||||||||||| |||| ||| ||||||||||  |||  ||||||||||| ||||||    
T  39458608 gactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctcc 39458543  T

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Target: chr2; HSP #57
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 305
Target Start/End: Complemental strand, 39603046 - 39602969
Alignment:
Q  228 ccagctctatcacttgaccttcaaattctctcgtttttgattcatgctccttcacccggccttcatgctgcttctctt 305  Q
    |||||||  ||||||| |||||||| |||||   |||||||||||||||||||| ||| | |||||| | ||||||||    
T  39603046 ccagctccgtcacttggccttcaaactctctttcttttgattcatgctccttcaaccgactttcatgtttcttctctt 39602969  T

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Target: chr2; HSP #58
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 39603237 - 39603192
Alignment:
Q  247 ttcaaattctctcgtttttgattcatgctccttcacccggccttca 292  Q
    |||||||||||||  ||||||||||||||||||| | |||||||||    
T  39603237 ttcaaattctctctcttttgattcatgctccttcgctcggccttca 39603192  T

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Target: chr2; HSP #59
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 39161494 - 39161446
Alignment:
Q  151 gctcctccacctggccttcatgttgcttctcttttgactcaagttcctt 199  Q
    ||||||||||  | |||||||  ||||||||||||||||||||||||||    
T  39161494 gctcctccactcgtccttcatactgcttctcttttgactcaagttcctt 39161446  T

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Target: chr2; HSP #60
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 39207700 - 39207748
Alignment:
Q  151 gctcctccacctggccttcatgttgcttctcttttgactcaagttcctt 199  Q
    ||||||||||  | |||||||  ||||||||||||||||||||||||||    
T  39207700 gctcctccactcgtccttcatactgcttctcttttgactcaagttcctt 39207748  T

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Target: chr2; HSP #61
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 39473946 - 39474062
Alignment:
Q  2 ttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaaaagcttctgtttcaatacaaaatca 101  Q
    ||||||||  ||||||| ||| ||||| |||   ||||| ||||| |||| ||| | || ||| ||| |||||||| ||||||||||  |||| ||||||    
T  39473946 ttttgatttatgctcctccactcggccatcaagctgcttctcttttgacttaagcttctccatgcggctttcaaaatgcttctgttttgataccaaatca 39474045  T
Q  102 ttcaccagctccgtcac 118  Q
    ||||| |||||| ||||    
T  39474046 ttcactagctccttcac 39474062  T

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Target: chr2; HSP #62
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 39603046 - 39602962
Alignment:
Q  106 ccagctccgtcacatgatctttaaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactc 190  Q
    ||||||||||||| ||  ||| ||| ||||| | ||||||||||||||||| || | | | |||||||| |||||||| ||||||    
T  39603046 ccagctccgtcacttggccttcaaactctctttcttttgattcatgctccttcaaccgactttcatgtttcttctcttctgactc 39602962  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 265 - 455
Target Start/End: Complemental strand, 19807042 - 19806852
Alignment:
Q  265 tgattcatgctccttcacccggccttcatgctgcttctcttttaactcaaggtccttcattccgctctcgaactgcttttgtctcaacaccaaatcattc 364  Q
    |||||||||||||||||  ||||||||| | ||| |||||||  ||||||| ||||| ||   ||| ||||| ||||| ||| |  | ||||||||||||    
T  19807042 tgattcatgctccttcaatcggccttcaagttgcctctctttcgactcaagctccttaatatggctttcgaaatgcttctgttttgataccaaatcattc 19806943  T
Q  365 accagctccttcacttggctttccaaatgcttctgttttgaaatgtcatccatgacttgataaagctccttctcttttttctcaagttctt 455  Q
    | |||||||||||| ||||||||||| | ||| ||||||||||||| |||||||||||||| ||| |||  ||||||| |||  |||||||    
T  19806942 atcagctccttcacgtggctttccaattccttttgttttgaaatgttatccatgacttgatgaagttccaactcttttgtctttagttctt 19806852  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 247 - 326
Target Start/End: Complemental strand, 19807312 - 19807233
Alignment:
Q  247 ttcaaattctctcgtttttgattcatgctccttcacccggccttcatgctgcttctcttttaactcaaggtccttcattc 326  Q
    |||||||||||||  ||||||| |||||||||||| ||||||||||||||||||||||||| ||||||| ||||| ||||    
T  19807312 ttcaaattctctctcttttgatgcatgctccttcatccggccttcatgctgcttctcttttgactcaagctccttgattc 19807233  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 19807309 - 19807238
Alignment:
Q  128 aaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctcttttgactcaagttcctt 199  Q
    ||||||||||| ||||||| ||||||||| || | |||||||||| |||||||||||||||||||| |||||    
T  19807309 aaattctctctcttttgatgcatgctccttcatccggccttcatgctgcttctcttttgactcaagctcctt 19807238  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 19807298 - 19807223
Alignment:
Q  1 cttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaa 76  Q
    |||||||| | |||||||||| |||||||||||  ||||| ||||| |||||||| ||||| ||||||||||||||    
T  19807298 cttttgatgcatgctccttcatccggccttcatgctgcttctcttttgactcaagctccttgattcggttttcaaa 19807223  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 19807042 - 19806929
Alignment:
Q  5 tgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcaaaaagcttctgtttcaatacaaaatcattc 104  Q
    |||||| ||||||||||  |||||||||  |||| | |||||||||||||| ||||| ||  || |||| ||| ||||||||||  |||| |||||||||    
T  19807042 tgattcatgctccttcaatcggccttcaagttgcctctctttcgactcaagctccttaatatggctttcgaaatgcttctgttttgataccaaatcattc 19806943  T
Q  105 accagctccgtcac 118  Q
    | ||||||| ||||    
T  19806942 atcagctccttcac 19806929  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 457
Target Start/End: Complemental strand, 17059133 - 17059049
Alignment:
Q  373 cttcacttggctttccaaatgcttctgttttgaaatgtcatccatgacttgataaagctccttctcttttttctcaagttcttgc 457  Q
    ||||| || |||||| |||||||||||||||||||||| |||||||||||||  ||| ||  |||||||| || | |||||||||    
T  17059133 cttcaatttgctttcaaaatgcttctgttttgaaatgttatccatgacttgacgaagttctctctcttttgtcacgagttcttgc 17059049  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 33560248 - 33560198
Alignment:
Q  262 ttttgattcatgctccttcacccggccttcatgctgcttctcttttaactc 312  Q
    ||||||||||  ||||||||||||||||||||| ||| |||||||| ||||    
T  33560248 ttttgattcaaactccttcacccggccttcatgttgcatctcttttgactc 33560198  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 33560248 - 33560198
Alignment:
Q  140 ttttgattcatgctcctccacctggccttcatgttgcttctcttttgactc 190  Q
    ||||||||||  ||||| |||| |||||||||||||| |||||||||||||    
T  33560248 ttttgattcaaactccttcacccggccttcatgttgcatctcttttgactc 33560198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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