View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9778_high_27 (Length: 324)

Name: NF9778_high_27
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9778_high_27
NF9778_high_27
[»] chr4 (9 HSPs)
chr4 (1-308)||(44865062-44865369)
chr4 (94-228)||(44883021-44883155)
chr4 (49-228)||(44851005-44851184)
chr4 (127-226)||(44899846-44899945)
chr4 (98-228)||(44839358-44839488)
chr4 (3-36)||(6606058-6606091)
chr4 (3-36)||(21344817-21344850)
chr4 (3-36)||(29195095-29195128)
chr4 (272-308)||(44899768-44899804)
[»] chr3 (3 HSPs)
chr3 (132-226)||(12925382-12925476)
chr3 (3-37)||(3054993-3055027)
chr3 (3-36)||(26871547-26871580)
[»] chr8 (5 HSPs)
chr8 (1-43)||(34778728-34778770)
chr8 (1-40)||(35287712-35287751)
chr8 (3-37)||(6530806-6530840)
chr8 (3-36)||(22268976-22269009)
chr8 (3-36)||(26688865-26688898)
[»] chr2 (3 HSPs)
chr2 (3-37)||(16525177-16525211)
chr2 (3-36)||(342395-342428)
chr2 (3-36)||(26482093-26482126)
[»] chr6 (3 HSPs)
chr6 (1-32)||(3869700-3869731)
chr6 (3-36)||(24334068-24334101)
chr6 (4-36)||(12253707-12253739)
[»] chr7 (5 HSPs)
chr7 (3-37)||(6426095-6426129)
chr7 (3-36)||(5273633-5273666)
chr7 (3-36)||(31835192-31835225)
chr7 (3-36)||(35328917-35328950)
chr7 (3-36)||(48039690-48039723)
[»] chr5 (1 HSPs)
chr5 (3-37)||(31669067-31669101)
[»] chr1 (1 HSPs)
chr1 (3-37)||(15581184-15581218)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 44865369 - 44865062
Alignment:
Q  1 ctcaagccaacaccatcaggccaacccaagtgggttacaatttgtataacttagcactcctaacataatcagactcccaacacaatgataataatcttaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44865369 ctcaagccaacaccatcaggccaacccaagtgggttacaatttgtataacttagcactcctaacataatcagactcccaacacaatgataataatcttaa 44865270  T
Q  101 tatttcaaacagtgagaacttgtgtggaatgaacttacttgagtcaagactgaacctttaagatttttcagtctgccataaaaaagtaggtgctctctac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44865269 tatttcaaacagtgagaacttgtgtggaatgaacttacttgagtcaagattgaacctttaagatttttcagtctgccataaaaaagtaggtgctctctac 44865170  T
Q  201 ctgtcaagctttcccacagcaagctatatagtatcacgagnnnnnnnnnttagaaacttctttcgaattatacaaatttgatttcaggaaaaacataaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44865169 ctgtcaagctttcccacagcaagctatatagtatcacgagaaaaaaaaattagaaacttctttcgaattatacaaatttgatttcaggaaaaacataaac 44865070  T
Q  301 attggagg 308  Q
    ||||||||    
T  44865069 attggagg 44865062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 94 - 228
Target Start/End: Complemental strand, 44883155 - 44883021
Alignment:
Q  94 atcttaatatttcaaacagtgagaacttgtgtggaatgaacttacttgagtcaagactgaacctttaagatttttcagtctgccataaaaaagtaggtgc 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||| ||||||||||| ||||||||||||    
T  44883155 atcttaatatttcaaacagtgagaacttgtgtggaatgaacttactttagtcaaggctgaaccttgaagatttttaagtctgccatagaaaagtaggtgc 44883056  T
Q  194 tctctacctgtcaagctttcccacagcaagctata 228  Q
    ||||| |||||||||||||||||||||||||||||    
T  44883055 tctctgcctgtcaagctttcccacagcaagctata 44883021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 49 - 228
Target Start/End: Complemental strand, 44851184 - 44851005
Alignment:
Q  49 acttagcactcctaacataatcagactcccaacacaatgataataatcttaatatttcaaacagtgagaacttgtgtggaatgaacttacttgagtcaag 148  Q
    ||||| || ||||||| |||||| ||||| ||||||   |||||||||  ||||||| ||||||| | |  |  |||||||||||||||| ||||||||     
T  44851184 acttaacattcctaacgtaatcatactcctaacacagcaataataatccaaatattttaaacagtaatagttcctgtggaatgaacttacatgagtcaaa 44851085  T
Q  149 actgaacctttaagatttttcagtctgccataaaaaagtaggtgctctctacctgtcaagctttcccacagcaagctata 228  Q
    ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  44851084 actgaacctttaagattctttagtctgccataaaaaagtaggtgttctctacctgtcaagctttcccacagcaaactata 44851005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 44899945 - 44899846
Alignment:
Q  127 gaatgaacttacttgagtcaagactgaacctttaagatttttcagtctgccataaaaaagtaggtgctctctacctgtcaagctttcccacagcaagcta 226  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  44899945 gaatgaacttacttgagtcaagactgaacctttaaggtttttaagtctaccataaaaaagtaggtgttctctacctgtcaaactttcccacagcaagcta 44899846  T

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Target: chr4; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 98 - 228
Target Start/End: Complemental strand, 44839488 - 44839358
Alignment:
Q  98 taatatttcaaacagtgagaacttgtgtggaatgaacttacttgagtcaagactgaacctttaagatttttcagtctgccataaaaaagtaggtgctctc 197  Q
    |||| ||||||||||| |||| |  | ||| || |||||||||||||||||| ||||||| |||| ||||| ||||| ||||||||||||||||||||||    
T  44839488 taatgtttcaaacagtaagaattcctatggtatcaacttacttgagtcaagattgaacctgtaaggtttttaagtcttccataaaaaagtaggtgctctc 44839389  T
Q  198 tacctgtcaagctttcccacagcaagctata 228  Q
    |||||||||||||||||||||||||||||||    
T  44839388 tacctgtcaagctttcccacagcaagctata 44839358  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 6606091 - 6606058
Alignment:
Q  3 caagccaacaccatcaggccaacccaagtgggtt 36  Q
    ||||||||||||||||| ||||||||||||||||    
T  6606091 caagccaacaccatcagaccaacccaagtgggtt 6606058  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 21344850 - 21344817
Alignment:
Q  3 caagccaacaccatcaggccaacccaagtgggtt 36  Q
    |||||||||| |||||||||||||||||||||||    
T  21344850 caagccaacatcatcaggccaacccaagtgggtt 21344817  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 29195128 - 29195095
Alignment:
Q  3 caagccaacaccatcaggccaacccaagtgggtt 36  Q
    ||||||||||||| ||||||||||||||||||||    
T  29195128 caagccaacaccaccaggccaacccaagtgggtt 29195095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 44899804 - 44899768
Alignment:
Q  272 acaaatttgatttcaggaaaaacataaacattggagg 308  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  44899804 acaaattggatttcaagaaaaacataaacattggagg 44899768  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 226
Target Start/End: Original strand, 12925382 - 12925476
Alignment:
Q  132 aacttacttgagtcaagactgaacctttaagatttttcagtctgccataaaaaagtaggtgctctctacctgtcaagctttcccacagcaagcta 226  Q
    |||||||||| || ||| | ||||||||||||||||| |||||||| ||||| ||||| |||||||| ||||||||| |||||||||||||||||    
T  12925382 aacttacttgtgttaaggcagaacctttaagatttttaagtctgccgtaaaagagtagatgctctcttcctgtcaagatttcccacagcaagcta 12925476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 3055027 - 3054993
Alignment:
Q  3 caagccaacaccatcaggccaacccaagtgggtta 37  Q
    ||||||||||||| |||||||||||||||||||||    
T  3055027 caagccaacaccaccaggccaacccaagtgggtta 3054993  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 26871547 - 26871580
Alignment:
Q  3 caagccaacaccatcaggccaacccaagtgggtt 36  Q
    ||||||||||||| ||||||||||||||||||||    
T  26871547 caagccaacaccaccaggccaacccaagtgggtt 26871580  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 34778770 - 34778728
Alignment:
Q  1 ctcaagccaacaccatcaggccaacccaagtgggttacaattt 43  Q
    ||||||||||||||| ||||| |||||||||||||||||||||    
T  34778770 ctcaagccaacaccaccaggcaaacccaagtgggttacaattt 34778728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 35287751 - 35287712
Alignment:
Q  1 ctcaagccaacaccatcaggccaacccaagtgggttacaa 40  Q
    ||||||||||||||| |||||| |||||||||||||||||    
T  35287751 ctcaagccaacaccaccaggcctacccaagtgggttacaa 35287712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 6530840 - 6530806
Alignment:
Q  3 caagccaacaccatcaggccaacccaagtgggtta 37  Q
    ||||||||||||| |||||||||||||||||||||    
T  6530840 caagccaacaccaccaggccaacccaagtgggtta 6530806  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 22268976 - 22269009
Alignment:
Q  3 caagccaacaccatcaggccaacccaagtgggtt 36  Q
    ||||||||||||| ||||||||||||||||||||    
T  22268976 caagccaacaccaccaggccaacccaagtgggtt 22269009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 26688898 - 26688865
Alignment:
Q  3 caagccaacaccatcaggccaacccaagtgggtt 36  Q
    ||||||||||||| ||||||||||||||||||||    
T  26688898 caagccaacaccaccaggccaacccaagtgggtt 26688865  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 16525211 - 16525177
Alignment:
Q  3 caagccaacaccatcaggccaacccaagtgggtta 37  Q
    |||||||||||||||||||||||||||||||||||    
T  16525211 caagccaacaccatcaggccaacccaagtgggtta 16525177  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 342428 - 342395
Alignment:
Q  3 caagccaacaccatcaggccaacccaagtgggtt 36  Q
    ||||||||||||| ||||||||||||||||||||    
T  342428 caagccaacaccaccaggccaacccaagtgggtt 342395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 26482126 - 26482093
Alignment:
Q  3 caagccaacaccatcaggccaacccaagtgggtt 36  Q
    |||||||||||||||||||||||| |||||||||    
T  26482126 caagccaacaccatcaggccaacctaagtgggtt 26482093  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 3869731 - 3869700
Alignment:
Q  1 ctcaagccaacaccatcaggccaacccaagtg 32  Q
    ||||||||||||||||||||||||||||||||    
T  3869731 ctcaagccaacaccatcaggccaacccaagtg 3869700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 24334068 - 24334101
Alignment:
Q  3 caagccaacaccatcaggccaacccaagtgggtt 36  Q
    ||||||||||||||| ||||||||||||||||||    
T  24334068 caagccaacaccatccggccaacccaagtgggtt 24334101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 12253739 - 12253707
Alignment:
Q  4 aagccaacaccatcaggccaacccaagtgggtt 36  Q
    ||||||||||||||||| |||||||||||||||    
T  12253739 aagccaacaccatcaggtcaacccaagtgggtt 12253707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 6426095 - 6426129
Alignment:
Q  3 caagccaacaccatcaggccaacccaagtgggtta 37  Q
    ||||||||||||| |||||||||||||||||||||    
T  6426095 caagccaacaccaccaggccaacccaagtgggtta 6426129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 5273633 - 5273666
Alignment:
Q  3 caagccaacaccatcaggccaacccaagtgggtt 36  Q
    ||||||||||||| ||||||||||||||||||||    
T  5273633 caagccaacaccaccaggccaacccaagtgggtt 5273666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 31835225 - 31835192
Alignment:
Q  3 caagccaacaccatcaggccaacccaagtgggtt 36  Q
    ||||||||||||| ||||||||||||||||||||    
T  31835225 caagccaacaccaccaggccaacccaagtgggtt 31835192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 35328917 - 35328950
Alignment:
Q  3 caagccaacaccatcaggccaacccaagtgggtt 36  Q
    ||||||||||||| ||||||||||||||||||||    
T  35328917 caagccaacaccaccaggccaacccaagtgggtt 35328950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 48039690 - 48039723
Alignment:
Q  3 caagccaacaccatcaggccaacccaagtgggtt 36  Q
    ||||||||||||| ||||||||||||||||||||    
T  48039690 caagccaacaccaccaggccaacccaagtgggtt 48039723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 31669067 - 31669101
Alignment:
Q  3 caagccaacaccatcaggccaacccaagtgggtta 37  Q
    ||||||||||||||||| |||||||||||||||||    
T  31669067 caagccaacaccatcagaccaacccaagtgggtta 31669101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 15581184 - 15581218
Alignment:
Q  3 caagccaacaccatcaggccaacccaagtgggtta 37  Q
    ||||||||||||| |||||||||||||||||||||    
T  15581184 caagccaacaccaccaggccaacccaagtgggtta 15581218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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