View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_high_33 (Length: 277)
Name: NF9778_high_33
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 47064545 - 47064300
Alignment:
| Q |
19 |
ttaaaatctgcatgggctgcagtttctgcattggtcatatcaaataacttttttcgtccttccgtctcagagccgatttgcttccatcccatcttgatta |
118 |
Q |
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| T |
47064545 |
ttaaaatctgcttgggctgcagtttctgcattggtcatatcaaataacttttttcttccttccgtctcagagccgattttcttccatcccatcttgatta |
47064446 |
T |
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| Q |
119 |
gacttttacctctttttgggagacgcagaagaacaaaaaattaatcttaagtctttgcatcataacaaattaacaaagccaacatacctaatgattagta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47064445 |
gacttttacctctttttgggagacgcagaagaacaaaaaattaatctcaagtctttgcatcataacaaattaacaaagccaacatacctaatgattagta |
47064346 |
T |
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| Q |
219 |
acaatgcttggcacatctatattcaagaagcacttttgagtaatct |
264 |
Q |
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| T |
47064345 |
acaatgcttggcacatctatattcaagaagcacttttgagtaatct |
47064300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 47055462 - 47055353
Alignment:
| Q |
19 |
ttaaaatctgcatgggctgcagtttctgcattggtcatatcaaataacttttttcgtccttccgtctcagagccgatttgcttccatcccatcttgatta |
118 |
Q |
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|||| ||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47055462 |
ttaacatctgcatgtgctgctgtttctgcattggtcatatctgataacatttttcgtccttccgtctcagaggtgatttgcttccatcccatcttgatta |
47055363 |
T |
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| Q |
119 |
gacttttacc |
128 |
Q |
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| T |
47055362 |
aactcttacc |
47055353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 47061063 - 47060955
Alignment:
| Q |
19 |
ttaaaatctgcatgggctgcagtttctgcattggtcatatcaaataacttttttcgtccttccgtctcagagccgatttgcttccatcccatcttgatta |
118 |
Q |
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||||||| |||||| ||||| | ||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
47061063 |
ttaaaatttgcatgtgctgctatgtctgcattg-tcatatcagataacattttccgtccttccgtctcagacgtgatttgcttccatcgcatcttgatta |
47060965 |
T |
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| Q |
119 |
gacttttacc |
128 |
Q |
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||||||||| |
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| T |
47060964 |
aacttttacc |
47060955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 47055330 - 47055268
Alignment:
| Q |
132 |
ttttgggagacgcagaagaacaaaaaattaatcttaagtctttgcatcataacaaattaacaa |
194 |
Q |
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||||||||||| || |||||||| | ||||||| ||| ||||| |||||||||||||||||| |
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| T |
47055330 |
ttttgggagacacaaaagaacaacagattaatcataaacctttgaatcataacaaattaacaa |
47055268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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