View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_high_35 (Length: 270)
Name: NF9778_high_35
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_high_35 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 270
Target Start/End: Complemental strand, 37219542 - 37219282
Alignment:
| Q |
6 |
aggagcagagaccctaccattcttatccacactactgttaggaaacagagacatgatgcagttggtcttttctttgnnnnnnnnnnnnagaaagtatggt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37219542 |
aggagcagagaccctaccattcttatccacactactgttaggaaacagagacatgatgcagttggtcttttctttgttttttttt---agaaagtatggt |
37219446 |
T |
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| Q |
106 |
cgttttatatctaatcaaaaaactttaatgccttactctcacatgacatatgcgacaaaacatccttactcttctaattcaagtgtttacatatacagtt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37219445 |
cgttttatatctaatcaaaaaactttaatgccttactctcacatgacatatgcgacaaaacatccttactcttctaattcaagtgtttacatatacagtt |
37219346 |
T |
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| Q |
206 |
aaaattggcataatctttatagtttttgtttgagaaatttttatagttgttagttacatttcttt |
270 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37219345 |
aaaattggcataatc-ttatagtttttgtttgagaaatttatatagttgttagttacatttcttt |
37219282 |
T |
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