View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9778_high_41 (Length: 254)

Name: NF9778_high_41
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9778_high_41
NF9778_high_41
[»] chr8 (1 HSPs)
chr8 (1-244)||(15348667-15348910)
[»] chr3 (3 HSPs)
chr3 (50-240)||(47451938-47452128)
chr3 (191-243)||(11015544-11015596)
chr3 (50-122)||(11015668-11015740)
[»] chr5 (2 HSPs)
chr5 (59-244)||(29696075-29696260)
chr5 (60-138)||(29687975-29688053)
[»] chr4 (16 HSPs)
chr4 (45-136)||(48875695-48875786)
chr4 (45-151)||(48870391-48870497)
chr4 (45-151)||(48886077-48886183)
chr4 (112-232)||(48147756-48147876)
chr4 (50-152)||(50250909-50251011)
chr4 (103-240)||(48705390-48705527)
chr4 (63-160)||(48891279-48891376)
chr4 (180-244)||(48898694-48898758)
chr4 (1-87)||(45366402-45366488)
chr4 (39-125)||(45372215-45372301)
chr4 (63-152)||(48852530-48852619)
chr4 (184-232)||(48735421-48735469)
chr4 (53-136)||(37827129-37827212)
chr4 (95-238)||(45384901-45385044)
chr4 (199-243)||(7877738-7877782)
chr4 (60-136)||(48902802-48902878)
[»] chr6 (1 HSPs)
chr6 (62-157)||(21015672-21015767)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 15348667 - 15348910
Alignment:
Q  1 tctgcttcactcaatgttgattttctacatccacaaaatcattctgattttgaaattgaaggttcatgtagaggctttgtacttttgaactattattcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15348667 tctgcttcactcaatgttgattttctacatccacaaaatcattctgattttgaaattaaaggttcatgtagaggctttgtacttttgaactattattcaa 15348766  T
Q  101 acctctatctatggaatccatccaccggatttcacagaaaagtacctttgtcccctattggtttgaaattagacgctgaatatttctatagtttcgggta 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15348767 tcctctatctatggaatccatccaccggatttcacagaaaagtacctttgtcccctattggtttgaaattagacgctgaatatttctatagtttcgggta 15348866  T
Q  201 tgaccaattaaaagatgattacttggtggttttaatgtcctatg 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  15348867 tgaccaattaaaagatgattacttggtggttttaatgtcctatg 15348910  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 50 - 240
Target Start/End: Complemental strand, 47452128 - 47451938
Alignment:
Q  50 ttgaaattgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacagaaaagtaccttt 149  Q
    |||||||| |||||||||||||||| ||| ||||||| |  | || ||||||| ||||  |||||||||||||||| ||| |||||| | || |||||||    
T  47452128 ttgaaattaaaggttcatgtagagggtttatacttttaagttgttcttcaaacatctacatatggaatccatccactggagttcacaaacaaataccttt 47452029  T
Q  150 gtcccctattggtttgaaattagacgctgaatatttctatagtttcgggtatgaccaattaaaagatgattacttggtggttttaatgtcc 240  Q
    | | ||| ||||||  ||  |||| ||  | ||||| ||| | || ||||||||| | |||| |||||||||||| |||||||||||||||    
T  47452028 gcctccttttggttccaatgtagatgcaaattatttttattggtttgggtatgacgagttaacagatgattacttagtggttttaatgtcc 47451938  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 11015596 - 11015544
Alignment:
Q  191 gtttcgggtatgaccaattaaaagatgattacttggtggttttaatgtcctat 243  Q
    |||| ||||||||||| |||| |||||||||||||||||| | | ||||||||    
T  11015596 gttttgggtatgaccatttaagagatgattacttggtggtatcagtgtcctat 11015544  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 11015740 - 11015668
Alignment:
Q  50 ttgaaattgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatc 122  Q
    |||||||| || ||||||||||||| ||| || ||||||  | || ||||||| |||| ||||||||||||||    
T  11015740 ttgaaattaaaagttcatgtagaggatttatagttttgacttgttcttcaaacatctacctatggaatccatc 11015668  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 244
Target Start/End: Original strand, 29696075 - 29696260
Alignment:
Q  59 aaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacagaaaagtacctttgtcccctat 158  Q
    ||||||| |||||||||||| |||||||||||| ||| |||| ||||| | ||||||||||||||||||||||||||| |  | |||||||  |  | ||    
T  29696075 aaggttcgtgtagaggctttatacttttgaactgttactcaagcctctgtatatggaatccatccaccggatttcacaaacgaataccttttactacaat 29696174  T
Q  159 tggtttgaaattagacgctgaatatttctatagtttcgggtatgaccaattaaaagatgattacttggtggttttaatgtcctatg 244  Q
    || ||  ||   ||| ||  | ||||||||| |||| ||||||||| | | || |||||||||||||||| ||| |||||||||||    
T  29696175 tgattccaatccagatgcaaattatttctatggttttgggtatgacgagtcaacagatgattacttggtgatttcaatgtcctatg 29696260  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 29687975 - 29688053
Alignment:
Q  60 aggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacaga 138  Q
    ||||||||||||||| ||| ||||||    |  |||||||| ||| |||||||||||||||||||||||| ||||||||    
T  29687975 aggttcatgtagaggttttatactttgctccggttattcaagcctttatctatggaatccatccaccggagttcacaga 29688053  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 136
Target Start/End: Original strand, 48875695 - 48875786
Alignment:
Q  45 tgattttgaaattgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcaca 136  Q
    ||||||||||||| ||||||| || ||||||||| |||| ||| | | || ||||| |||||| ||||||||||||||||||||||||||||    
T  48875695 tgattttgaaattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccaccggatttcaca 48875786  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 48870391 - 48870497
Alignment:
Q  45 tgattttgaaattgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacagaaaagta 144  Q
    ||||||||||||| |||||||||||||||||||| || | ||| | | |  | ||| |||||| |||||||||||||||||||||||||||| | || ||    
T  48870391 tgattttgaaattaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaata 48870490  T
Q  145 cctttgt 151  Q
    |||||||    
T  48870491 cctttgt 48870497  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 48886077 - 48886183
Alignment:
Q  45 tgattttgaaattgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacagaaaagta 144  Q
    ||||||||||||| |||||||||||||||||||| || | ||| | | |  | ||| |||||| |||||||||||||||||||||||||||| | || ||    
T  48886077 tgattttgaaattaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaata 48886176  T
Q  145 cctttgt 151  Q
    |||||||    
T  48886177 cctttgt 48886183  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 48147876 - 48147756
Alignment:
Q  112 tggaatccatccaccggatttcacagaaaagtacctttgtcccctattggtttgaaattagacgctgaatatttctatagtttcgggtatgaccaattaa 211  Q
    ||||||||||||||||||  | |||  ||| |||||||||| ||| ||||||  || ||||| || | ||||| |||| |||| ||||||||||| ||||    
T  48147876 tggaatccatccaccggagctaacaagaaaatacctttgtctccttttggttccaatttagatgcagcatattactatggttttgggtatgaccagttaa 48147777  T
Q  212 aagatgattacttggtggttt 232  Q
     ||||||||||||||||||||    
T  48147776 cagatgattacttggtggttt 48147756  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 152
Target Start/End: Complemental strand, 50251011 - 50250909
Alignment:
Q  50 ttgaaattgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacagaaaagtaccttt 149  Q
    |||||||| |||||||||||||||| ||| || ||||  ||| || ||||| |||||| ||||||||||||||||||||  |||||| | || |||||||    
T  50251011 ttgaaattaaaggttcatgtagaggatttatatttttccactgtttttcaagcctctacctatggaatccatccaccgggcttcacatacaaataccttt 50250912  T
Q  150 gtc 152  Q
    |||    
T  50250911 gtc 50250909  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 48705527 - 48705390
Alignment:
Q  103 ctctatctatggaatccatccaccggatttcacagaaaagtacctttgtcccctattggtttgaaattagacgctgaatatttctatagtttcgggtatg 202  Q
    ||||| || ||||||||||| || |||||||||| | || |||||||||| ||| ||||||   | ||||| || ||||||||| || |||| || ||||    
T  48705527 ctctacctgtggaatccatctactggatttcacaaacaaatacctttgtcaccttttggttccgatttagatgcagaatatttccatggttttggatatg 48705428  T
Q  203 accaattaaaagatgattacttggtggttttaatgtcc 240  Q
    | || | || ||||||||||||||| |||| |||||||    
T  48705427 atcagtcaacagatgattacttggttgtttcaatgtcc 48705390  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 160
Target Start/End: Original strand, 48891279 - 48891376
Alignment:
Q  63 ttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacagaaaagtacctttgtcccctattg 160  Q
    |||||||||||| |||||||||||| |   | | |||||| ||||| |||||||||||||||| ||| |||||| | || |||||||||| |||||||    
T  48891279 ttcatgtagagggtttgtacttttgcatactaactcaaacatctatgtatggaatccatccactggacttcacaaacaaatacctttgtctcctattg 48891376  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 48898694 - 48898758
Alignment:
Q  180 atatttctatagtttcgggtatgaccaattaaaagatgattacttggtggttttaatgtcctatg 244  Q
    |||||||||| |||| |||||||| || |||| |||||||||||| ||||||||| |||||||||    
T  48898694 atatttctatggttttgggtatgatcagttaacagatgattacttagtggttttattgtcctatg 48898758  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 45366488 - 45366402
Alignment:
Q  1 tctgcttcactcaatgttgattttctacatccacaaaatcattctgattttgaaattgaaggttcatgtagaggctttgtacttttg 87  Q
    ||||||||||||||| || ||||||| | |||  ||  | |||||||| || ||||| |||||||||||||||||||| ||||||||    
T  45366488 tctgcttcactcaatcttcattttctgcttcccgaatcttattctgatcttcaaattaaaggttcatgtagaggctttatacttttg 45366402  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 45372301 - 45372215
Alignment:
Q  39 tcattctgattttgaaattgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccac 125  Q
    ||||| |||| |||||||| |||||||||||||||| ||| || ||||| |   | |||||| | ||||||||||||||||||||||    
T  45372301 tcattttgatcttgaaattaaaggttcatgtagagggtttatatttttgcatggtaattcaaccttctatctatggaatccatccac 45372215  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 48852530 - 48852619
Alignment:
Q  63 ttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacagaaaagtacctttgtc 152  Q
    |||||||||||||||| || ||||| ||  || |||| |  | |||||||||||||||||||||||| |||||| | || ||||||||||    
T  48852530 ttcatgtagaggctttatatttttgcaccgttcttcagagatttatctatggaatccatccaccggagttcacaaacaaatacctttgtc 48852619  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 48735469 - 48735421
Alignment:
Q  184 ttctatagtttcgggtatgaccaattaaaagatgattacttggtggttt 232  Q
    |||||| |||| ||||||||||| |||| ||||||||||||||||||||    
T  48735469 ttctatggttttgggtatgaccatttaacagatgattacttggtggttt 48735421  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 37827212 - 37827129
Alignment:
Q  53 aaattgaaggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcaca 136  Q
    ||||| |||||||| ||||||| |||||| ||||| ||  || || |||| ||||  |||||||||||||||| ||||||||||    
T  37827212 aaattaaaggttcaggtagagggtttgtatttttgcaccgttctttaaacatctacatatggaatccatccactggatttcaca 37827129  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 238
Target Start/End: Complemental strand, 45385044 - 45384901
Alignment:
Q  95 attcaaacctctatctatggaatccatccaccggatttcacagaaaagtacctttgtcccctattggtttgaaattagacgctgaatatttctatagttt 194  Q
    |||||| ||| |||||||||||||||| ||   || |||||| | || |||||||||| ||| ||||||  || |||||  | || ||||||||| ||||    
T  45385044 attcaagcctttatctatggaatccattcattagagttcacaaagaaatacctttgtctccttttggttctaatttagatacagattatttctatggttt 45384945  T
Q  195 cgggtatgaccaattaaaagatgattacttggtggttttaatgt 238  Q
     |||||||| || | || | ||||||| |||||||||| |||||    
T  45384944 tgggtatgatcagtcaacaaatgattatttggtggtttcaatgt 45384901  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 7877738 - 7877782
Alignment:
Q  199 tatgaccaattaaaagatgattacttggtggttttaatgtcctat 243  Q
    |||||||||| || |||||||||||||||||||| | ||||||||    
T  7877738 tatgaccaatcaagagatgattacttggtggtttcattgtcctat 7877782  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 48902802 - 48902878
Alignment:
Q  60 aggttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcaca 136  Q
    ||||||||| ||||| |||||||||||| ||| || ||  | | ||||| |||||||||| ||||| ||||||||||    
T  48902802 aggttcatgcagagggtttgtacttttgcactgttctttcaccatctatttatggaatccttccactggatttcaca 48902878  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 157
Target Start/End: Original strand, 21015672 - 21015767
Alignment:
Q  62 gttcatgtagaggctttgtacttttgaactattattcaaacctctatctatggaatccatccaccggatttcacagaaaagtacctttgtccccta 157  Q
    ||||||||||||| ||| || ||||| || || |||||||| |||| |||||||||||||||||  || |||||| | || |||||||||| ||||    
T  21015672 gttcatgtagagggtttatatttttgcaccatgattcaaacatctacctatggaatccatccactagagttcacaaacaaatacctttgtctccta 21015767  T

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