View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9778_high_43 (Length: 252)

Name: NF9778_high_43
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9778_high_43
NF9778_high_43
[»] chr3 (8 HSPs)
chr3 (13-121)||(21788927-21789035)
chr3 (13-121)||(39463934-39464042)
chr3 (14-121)||(15462897-15463004)
chr3 (122-199)||(21788822-21788899)
chr3 (21-121)||(37152130-37152230)
chr3 (122-185)||(39463843-39463906)
chr3 (198-249)||(21788788-21788839)
chr3 (122-185)||(15463032-15463095)
[»] chr6 (2 HSPs)
chr6 (14-121)||(2960924-2961031)
chr6 (122-185)||(2960539-2960602)
[»] chr5 (3 HSPs)
chr5 (13-114)||(31468517-31468618)
chr5 (17-97)||(18092480-18092560)
chr5 (197-249)||(19534619-19534671)
[»] chr8 (1 HSPs)
chr8 (197-252)||(39605824-39605879)
[»] chr2 (2 HSPs)
chr2 (25-114)||(16324167-16324256)
chr2 (17-97)||(42401505-42401585)
[»] chr1 (1 HSPs)
chr1 (33-103)||(6842849-6842919)


Alignment Details
Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 21789035 - 21788927
Alignment:
Q  13 cagagaggtaggcaccaacattgtttcgaatgatacctccgaacccagcacgaattggagttccgagacaactcccgtccacattaaggatgtgacaatg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21789035 cagagaggtaggcaccaacattgtttcgaatgatacctccgaacccagcacggattggagttccgagacaactcccgtccacattaaggatgtgacaatg 21788936  T
Q  113 attgttatt 121  Q
    |||||||||    
T  21788935 attgttatt 21788927  T

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Target: chr3; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 39464042 - 39463934
Alignment:
Q  13 cagagaggtaggcaccaacattgtttcgaatgatacctccgaacccagcacgaattggagttccgagacaactcccgtccacattaaggatgtgacaatg 112  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  39464042 cagagaggtaggcaccaacattgtttcaaatgatacctccgaacccagcacggattggtgttccgagacaactcccgtccacattaaggatgtgacaatg 39463943  T
Q  113 attgttatt 121  Q
    |||||||||    
T  39463942 attgttatt 39463934  T

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Target: chr3; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 15462897 - 15463004
Alignment:
Q  14 agagaggtaggcaccaacattgtttcgaatgatacctccgaacccagcacgaattggagttccgagacaactcccgtccacattaaggatgtgacaatga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||    
T  15462897 agagaggtaggcaccaacattgtttcgaatgatacctccgaacccagcacggattggagttccgagacaactctcgtccacattaaggatgtgacattga 15462996  T
Q  114 ttgttatt 121  Q
    | ||||||    
T  15462997 tggttatt 15463004  T

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Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 21788899 - 21788822
Alignment:
Q  122 agggatgacattgctcctcatgaaacttgactcgatgacgttgacaaaatcgttgatacggtagtggtaatttgatgt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21788899 agggatgacattgctcctcatgaaacttgactcgatgacgttgacagaatcgttgatacggtagtggtaatttgatgt 21788822  T

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Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 37152230 - 37152130
Alignment:
Q  21 taggcaccaacattgtttcgaatgatacctccgaacccagcacgaattggagttccgagacaactcccgtccacattaaggatgtgacaatgattgttat 120  Q
    ||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||| ||||  ||||||||    
T  37152230 taggctccaacattgtttcgaatgatacctccgaaccccgcacggattggtgttccgagacaactcccgtccacattaagaatgttacaaatattgttat 37152131  T
Q  121 t 121  Q
    |    
T  37152130 t 37152130  T

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Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 39463906 - 39463843
Alignment:
Q  122 agggatgacattgctcctcatgaaacttgactcgatgacgttgacaaaatcgttgatacggtag 185  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  39463906 agggatgacattgctcctcttgaaacttgactcgatgacgttgacagaatcgttgatacggtag 39463843  T

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Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 21788839 - 21788788
Alignment:
Q  198 gtagtggtaatttgatgttgcataatgttaaaggtcatgaattcaacacttt 249  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21788839 gtagtggtaatttgatgttgcataatgttaaaggtcatgagttcaacacttt 21788788  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 15463032 - 15463095
Alignment:
Q  122 agggatgacattgctcctcatgaaacttgactcgatgacgttgacaaaatcgttgatacggtag 185  Q
    |||||||||||| |||  |||||||||| ||||| ||||||||||| |||| || |||||||||    
T  15463032 agggatgacattactctgcatgaaactttactcggtgacgttgacagaatcattaatacggtag 15463095  T

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Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 2961031 - 2960924
Alignment:
Q  14 agagaggtaggcaccaacattgtttcgaatgatacctccgaacccagcacgaattggagttccgagacaactcccgtccacattaaggatgtgacaatga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2961031 agagaggtaggcaccaacattgtttcgaatgatacctccgaacccagcacatattggagttccgagacaactcccgtccacattaaggatgtgacaatga 2960932  T
Q  114 ttgttatt 121  Q
    | ||||||    
T  2960931 tggttatt 2960924  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 2960602 - 2960539
Alignment:
Q  122 agggatgacattgctcctcatgaaacttgactcgatgacgttgacaaaatcgttgatacggtag 185  Q
    |||||||||||| ||| |||||||||||||||| ||||| |||||| |||| || |||||||||    
T  2960602 agggatgacattactcttcatgaaacttgactcaatgacattgacataatcattaatacggtag 2960539  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 31468618 - 31468517
Alignment:
Q  13 cagagaggtaggcaccaacattgtttcgaatgatacctccgaacccagcacgaattggagttccgagacaactcccgtccacattaaggatgtgacaatg 112  Q
    |||| ||||| |||||||| ||||||||||  ||||||||||||||||| || ||||| |||||||||||||| |||||||||||||||||| |||| ||    
T  31468618 cagataggtaagcaccaacgttgtttcgaaatatacctccgaacccagcccggattggggttccgagacaactgccgtccacattaaggatgagacattg 31468519  T
Q  113 at 114  Q
    ||    
T  31468518 at 31468517  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 18092560 - 18092480
Alignment:
Q  17 gaggtaggcaccaacattgtttcgaatgatacctccgaacccagcacgaattggagttccgagacaactcccgtccacatt 97  Q
    ||||||||| ||| |||||||| ||| ||||| ||||||||| ||||| ||||| |||||||| || || |||||||||||    
T  18092560 gaggtaggctccaccattgtttggaaagatacatccgaaccccgcacggattggtgttccgaggcagcttccgtccacatt 18092480  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 19534619 - 19534671
Alignment:
Q  197 tgtagtggtaatttgatgttgcataatgttaaaggtcatgaattcaacacttt 249  Q
    ||||||||||| ||||| | ||||||||||||||||||||| |||||||||||    
T  19534619 tgtagtggtaaattgatttagcataatgttaaaggtcatgagttcaacacttt 19534671  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 39605824 - 39605879
Alignment:
Q  197 tgtagtggtaatttgatgttgcataatgttaaaggtcatgaattcaacactttatt 252  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39605824 tgtagtggtaatttgatgttgcataatgttaaaggtcatgagttcaacactttatt 39605879  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 16324256 - 16324167
Alignment:
Q  25 caccaacattgtttcgaatgatacctccgaacccagcacgaattggagttccgagacaactcccgtccacattaaggatgtgacaatgat 114  Q
    ||||||| ||||||||||  ||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||| || |||||||| ||||    
T  16324256 caccaacgttgtttcgaaaaatacctccgaatccagctcgaattggagttccgagacaactgccgtctacattgagaatgtgacattgat 16324167  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 42401505 - 42401585
Alignment:
Q  17 gaggtaggcaccaacattgtttcgaatgatacctccgaacccagcacgaattggagttccgagacaactcccgtccacatt 97  Q
    ||||||||| ||| |||||||||||| ||||||||||||||| ||| | ||||| |||||||| || || |||||||||||    
T  42401505 gaggtaggctccaccattgtttcgaaagatacctccgaaccccgcatggattggtgttccgaggcagcttccgtccacatt 42401585  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 6842849 - 6842919
Alignment:
Q  33 ttgtttcgaatgatacctccgaacccagcacgaattggagttccgagacaactcccgtccacattaaggat 103  Q
    ||||||| ||||| ||| ||||| ||||| ||||| ||||| || | |||||| |||||||||||||||||    
T  6842849 ttgtttctaatgaaaccaccgaaaccagctcgaatgggagtacctaaacaacttccgtccacattaaggat 6842919  T

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