View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_high_44 (Length: 252)
Name: NF9778_high_44
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 7285386 - 7285145
Alignment:
| Q |
1 |
tcttgatctttcaacacgtccatgactactaagttcaatatatgggcaagacacttcatatggaaatgatctccttcacccaacagcccattcttgatct |
100 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7285386 |
tcttgatctttcaacccgtccatgactactaagttcaatatatgggcaagacacttcatatggaaatgatctccttcacccaacaacccattcttgatct |
7285287 |
T |
|
| Q |
101 |
taagtcttcttttcaaataagcagttgccacatcattactaagtttcttaaattcctcaccttctaccactctaagggcatgctcataaaggatgaaaaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7285286 |
taagtcttcttttcaaataagcagttgccacatcattactaagtttcttaaattcctcaccttctaccactctaagggcatgctcataaaggatgaaaaa |
7285187 |
T |
|
| Q |
201 |
gtttgttacgactttcctactctcttttacatcgtacctttg |
242 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7285186 |
gtttgttacgactttcctacactcttttacatcgtacctttg |
7285145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 6838782 - 6838901
Alignment:
| Q |
1 |
tcttgatctttcaacacgtccatgactactaagttcaatatatgggcaagacacttcatatggaaatgatctccttcacccaacagcccattcttgatct |
100 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
6838782 |
tcttgatctttcaacccgtccatgactactaagttcaatatatgggcaacacacctcatatggaagtgatctccttcacccaacaacccattcttgatct |
6838881 |
T |
|
| Q |
101 |
taagtcttcttttcaaataa |
120 |
Q |
| |
|
|||||||| |||||||||| |
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| T |
6838882 |
taagtctttgtttcaaataa |
6838901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 6839259 - 6839365
Alignment:
| Q |
136 |
ttactaagtttcttaaattcctcaccttctaccactctaagggcatgctcataaaggatgaaaaagtttgttacgactttcctactctcttttacatcgt |
235 |
Q |
| |
|
|||| ||||| ||||||| ||||||||||||| || |||| |||||| |||| |||||||| ||||||||||| ||||||||| |||| || ||| || |
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| T |
6839259 |
ttacaaagttgcttaaatccctcaccttctacaaccctaaaggcatgttcatcaaggatgacaaagtttgttaaagctttcctacactctattgcattgt |
6839358 |
T |
|
| Q |
236 |
acctttg |
242 |
Q |
| |
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||||||| |
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|
| T |
6839359 |
acctttg |
6839365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 16000027 - 15999908
Alignment:
| Q |
1 |
tcttgatctttcaacacgtccatgactactaagttcaatatatgggcaagacacttcatatggaaatgatctccttcacccaacagcccattcttgatct |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| ||||| ||||||||||||| |||||||||||||| |
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|
| T |
16000027 |
tcttgatctttcaacccgtccatgactactaagttcaatatatgggcaacacacctcatatggaagtgatccccttcacccaacaacccattcttgatct |
15999928 |
T |
|
| Q |
101 |
taagtcttcttttcaaataa |
120 |
Q |
| |
|
|||||||| ||||||||||| |
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|
| T |
15999927 |
taagtctttttttcaaataa |
15999908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 242
Target Start/End: Complemental strand, 15999542 - 15999436
Alignment:
| Q |
136 |
ttactaagtttcttaaattcctcaccttctaccactctaagggcatgctcataaaggatgaaaaagtttgttacgactttcctactctcttttacatcgt |
235 |
Q |
| |
|
|||| ||||| ||||||| ||||||||||||| || |||| |||||| |||| |||||||| ||| ||||||| ||||||||| |||| || ||| || |
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|
| T |
15999542 |
ttacaaagttgcttaaatccctcaccttctacaaccctaaaggcatgttcatcaaggatgacaaactttgttatagctttcctacactctattgcattgt |
15999443 |
T |
|
| Q |
236 |
acctttg |
242 |
Q |
| |
|
||||||| |
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|
| T |
15999442 |
acctttg |
15999436 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 13307596 - 13307492
Alignment:
| Q |
17 |
cgtccatgactactaagttcaatatatgggcaagacacttcatatggaaatgatctccttcacccaacagcccattcttgatcttaagtcttcttttcaa |
116 |
Q |
| |
|
||||||| || || ||||||||||| || || | |||| ||||||| || ||||| |||||||||| || |||||| || ||||||||||||| || || |
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| T |
13307596 |
cgtccattacaaccaagttcaatatgtgtgctacacacctcatatgcaagtgatccccttcacccattaggccattcatgttcttaagtcttctctttaa |
13307497 |
T |
|
| Q |
117 |
ataag |
121 |
Q |
| |
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||||| |
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|
| T |
13307496 |
ataag |
13307492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 14596288 - 14596384
Alignment:
| Q |
25 |
actactaagttcaatatatgggcaagacacttcatatggaaatgatctccttcacccaacagcccattcttgatcttaagtcttcttttcaaataag |
121 |
Q |
| |
|
||||| ||||||||||| || || | |||| ||||||| || ||| | |||||||||| ||||||||| || ||||||||||||| || ||||||| |
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| T |
14596288 |
actaccaagttcaatatgtgtgctacacacctcatatgcaagtgacccccttcacccattagcccattcatgttcttaagtcttctctttaaataag |
14596384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 21282818 - 21282919
Alignment:
| Q |
20 |
ccatgactactaagttcaatatatgggcaagacacttcatatggaaatgatctccttcacccaacagcccattcttgatcttaagtcttcttttcaaata |
119 |
Q |
| |
|
|||| ||||| ||||||||||| | || | |||| ||||||| || ||||| ||||||||| | || ||||||| |||||||||||||||| ||||| |
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| T |
21282818 |
ccattactaccaagttcaatatgtatgccacacacctcatatgaaagtgatcatcttcacccattaaccaattcttgttcttaagtcttctttttaaata |
21282917 |
T |
|
| Q |
120 |
ag |
121 |
Q |
| |
|
|| |
|
|
| T |
21282918 |
ag |
21282919 |
T |
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