View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_high_47 (Length: 247)
Name: NF9778_high_47
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_high_47 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 31195108 - 31194871
Alignment:
| Q |
1 |
tagtagcaccaataattatttcacagatattctcacatcttgtgaacaaatttaaattaaataagaatttagaattactagtataaaatttgaatgttgc |
100 |
Q |
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| T |
31195108 |
tagtagcaccaataattatttcacacatattctcacatcttgtgaacacatttaaattaaataagaatttagaattactagtataaaatttgaatgttgc |
31195009 |
T |
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| Q |
101 |
aatgtgcttagggcataaaatctaaatgcaagaattttgcttattttatcttcaatatttgctgaggtatgtgattttggcattttatcaataacttctt |
200 |
Q |
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| T |
31195008 |
aatgtgcttagggcataaaatctaaatgcaagaattttgcttattttatcttcaatatttgctgaggtatgtgattttggcattttatcaataacttctt |
31194909 |
T |
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| Q |
201 |
cactctttacaccctccaataattgacattttcccctat |
239 |
Q |
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| T |
31194908 |
cactctttac-ccctccaataattgacatttccccctat |
31194871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 30866370 - 30866486
Alignment:
| Q |
63 |
aagaatttagaattactagtataaaatttgaatgttgcaatgtgctta-------gggcataaaatctaaatgcaagaattttgcttattttatcttcaa |
155 |
Q |
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| T |
30866370 |
aagaatttagagttactagtctaaaatttgaatgttgcaatgtgcttaggccttagggcataaaatctaaatgcaagaattttgcttattttatcttcaa |
30866469 |
T |
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| Q |
156 |
tatttgctgaggtatgt |
172 |
Q |
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| T |
30866470 |
aatttgctgaggtatgt |
30866486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 30866517 - 30866568
Alignment:
| Q |
188 |
tcaataacttcttcactctttacaccctccaataattgacattttcccctatg |
240 |
Q |
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||| |||| ||||||| | |||| ||||||||||||||||||||||||||||| |
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| T |
30866517 |
tcagtaacatcttcacaccttac-ccctccaataattgacattttcccctatg |
30866568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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