View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_high_52 (Length: 240)
Name: NF9778_high_52
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_high_52 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 49684140 - 49683918
Alignment:
| Q |
18 |
gtgttaacttcttattcttcaacaatttcatctcaacgtggtcgagtgaagacagtgacagtgaacgtacattaatacgtgatatccctgctccacgacc |
117 |
Q |
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| T |
49684140 |
gtgttaacttcttattcttcaacaatttcatctcaacgtggtcgagtgaagacagtgacagtgaacgtacattaatacgtgatatccctgctccacgacc |
49684041 |
T |
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| Q |
118 |
tattacttcatcttcatgtccaaactcttccctcccactgccactataaatttttctcgatacctccaaaacctcatccattgaaggcctcaattccttg |
217 |
Q |
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| T |
49684040 |
tattacttcatcttcatgtccaaactcttccctcccactgccactataaatttttctcaacacctccaaaacctcatccattgaaggcctcaattccttg |
49683941 |
T |
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| Q |
218 |
tcccgttgcaaacccgtgtcttt |
240 |
Q |
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| T |
49683940 |
tcccgttgcaaacccgtgtcttt |
49683918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 230
Target Start/End: Complemental strand, 49676107 - 49675897
Alignment:
| Q |
20 |
gttaacttcttattcttcaacaatttcatctcaacgtggtcgagtgaagacagtgacagtgaacgtacattaatacgtgatatccctgctccacgaccta |
119 |
Q |
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| T |
49676107 |
gttaactttttattcttcaacaatttcatctcaacgtgatcgggtgaggacgatgacagtgaacatacgttaatactcgacatcactgctccacgagcta |
49676008 |
T |
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| Q |
120 |
ttacttcatcttcatgtccaaactcttccctcccactgccactataaatttttctcgatacctccaaaacctcatccattgaaggcctcaattccttgtc |
219 |
Q |
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| T |
49676007 |
ttacttcctctacatttccaaactcatccctcccactaacactatcaattctcctcagcacgtccaaaacctcatccattgagggcctcaattccttatc |
49675908 |
T |
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| Q |
220 |
ccgttgcaaac |
230 |
Q |
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| T |
49675907 |
ccgctgcaaac |
49675897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 49671744 - 49671698
Alignment:
| Q |
184 |
caaaacctcatccattgaaggcctcaattccttgtcccgttgcaaac |
230 |
Q |
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| T |
49671744 |
caaaacctcttccatggaaggtctcaattccttgtccctttgcaaac |
49671698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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