View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_high_54 (Length: 239)
Name: NF9778_high_54
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_high_54 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 6474656 - 6474876
Alignment:
| Q |
1 |
aatataataattatctttcttaggaactacatttgaattttaatgaaacaaataaacagaactatagaaaatatatatataatcgttcaaaatttgtgac |
100 |
Q |
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| T |
6474656 |
aatataataattatctttcttaggaactacatttgaattttaatgaaacaaataaacagaactatagaaaatat----ataatcgttcaaaatttgtgac |
6474751 |
T |
|
| Q |
101 |
ccttcaacatatgctactaacaacaatcaaacattcatgacctataaactagttaagggaagtttaactaagttataaactttcacaaattattgaatgt |
200 |
Q |
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| T |
6474752 |
ccttcaacatatgctactaacaacaatcaaacattcatgacctataaactagttaagggaagtttaactaagctataaactttcacaaattattgaatgt |
6474851 |
T |
|
| Q |
201 |
ttgagaagctgtctatatgttaatg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
6474852 |
ttgagaagctgtctatatgttaatg |
6474876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 6463608 - 6463423
Alignment:
| Q |
3 |
tataataattatctttcttaggaactacatttgaattttaatgaaacaaataaacagaactatagaaaatatatatataatcgttcaaaatttgtgaccc |
102 |
Q |
| |
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|||||| ||||| |||| | |||| |||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||| |
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| T |
6463608 |
tataattattatatttccttggaatcacattttaattttaatgaaacaaataaacaaaactatagaaaata--------atcattcaaaatttgtgaccc |
6463517 |
T |
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| Q |
103 |
ttcaacatat--gctactaacaacaatcaaacattcatgacctataaactagttaagggaagtttaactaagttataaactttcacaaattatt |
194 |
Q |
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| T |
6463516 |
ttcaacataaaagctactaacaacaatcaaacattcatgacctataaactagttaagggaagtttaactaagctataaactttcacaaattatt |
6463423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 13036385 - 13036458
Alignment:
| Q |
152 |
gttaagggaagtttaactaagttataaactttcacaaattattgaatgtttgagaagctgtctatatgttaatg |
225 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||| |||||||| ||||||| ||||||||| |
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| T |
13036385 |
gttaagggaagtttaactaagctatactttttcacaaattattgaatatttgagaaactgtctacatgttaatg |
13036458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 6495585 - 6495627
Alignment:
| Q |
152 |
gttaagggaagtttaactaagttataaactttcacaaattatt |
194 |
Q |
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| T |
6495585 |
gttaagggaagtttagctaagctataaactttcacaaattatt |
6495627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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