View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_high_6 (Length: 543)
Name: NF9778_high_6
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 37219236 - 37218712
Alignment:
| Q |
1 |
ttaagataccataattatatgagtgttttttaaagaactatttgagttattaattcaattctaatcctaggttggcaagaaaattatcgcaagagttagc |
100 |
Q |
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| T |
37219236 |
ttaagataccataattatatgagtgtttttttaagaactatttgagttattaattcaattctaatcctaggttggcaagaaaattatcccaagagttagc |
37219137 |
T |
|
| Q |
101 |
ttctctgtaaatatacttcaacgagacattccaataaaaaatatggataagacaaacaatgtcgaatatgatattataatcaatgtactattttcatttg |
200 |
Q |
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| T |
37219136 |
ttctctgtaaatatacttcaacgagacattccaataaaaaatatggataagacaaacaatgtcgagtatgatattataatcaatgtactattctcatttg |
37219037 |
T |
|
| Q |
201 |
gtcttcctagccttagtgaactgtatatagccttaattaaagaacattgtacaatttaatactttttaattaaattatgatgatgctcctacatcattcg |
300 |
Q |
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| T |
37219036 |
gtcttcctagccttagtgaactatatatagccttaattaaagaacattgtacaatttaatactttttaattaaattatgatgatgctcctgcat-attcg |
37218938 |
T |
|
| Q |
301 |
aaatagaattgttggatttaagtatgagttgttaatcttacattgactatgannnnnnnnaaataattgactatgaatgtgttcaatattagatatataa |
400 |
Q |
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| T |
37218937 |
aaatagaattgttggatttaagtatgagttgttaatcttacattgactatgattttttttaagtaattgactatgaatgtgttccatattagatatataa |
37218838 |
T |
|
| Q |
401 |
gatatttgatatatttcatgtttcaagatattttgtgaagatgtaacacattcctctcttattggtattagagctttggtctaatgttgctcttggcgct |
500 |
Q |
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| T |
37218837 |
gatatttgatatatttcatgtttcaagatattttgtgaagatgtaacacattcctctcttattggtattagagctttggtctaatgttgctcttagcgct |
37218738 |
T |
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| Q |
501 |
tcttcaaattgtctgattcaacttag |
526 |
Q |
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| T |
37218737 |
tcttcaaattgtctgattcaacttag |
37218712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 6411940 - 6412011
Alignment:
| Q |
90 |
caagagttagcttctctgtaaatatacttcaacgagacattccaataaaaaatatggataagacaaacaatg |
161 |
Q |
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||||||||| |||| ||||||||||||| ||||||||||| |||| ||||| |||||||||| ||| |||| |
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| T |
6411940 |
caagagttaacttccttgtaaatatactttaacgagacatttcaattaaaaagatggataagataaagaatg |
6412011 |
T |
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