View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_high_60 (Length: 221)
Name: NF9778_high_60
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_high_60 |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 31937133 - 31937224
Alignment:
| Q |
111 |
ctcttttttgtttatacatatgaaaatggaaaatgggttgtgatgaaattgaatcttacttgaaagaagatgtgtaataaaagtgagcttca |
202 |
Q |
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| T |
31937133 |
ctcttttttgtttatacatatgaaaatggaaaatgggttgtgatgaaattgaatcttacttgaaagaagatgtgtaataaaagtgagcttca |
31937224 |
T |
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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 31937033 - 31937091
Alignment:
| Q |
13 |
agcacagacatgaaacagaccacaccatttgcagcaacaaagaatctagtgccaaagac |
71 |
Q |
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| T |
31937033 |
agcacagacatgaaacagaccacaccatttgcagcaacaaagaatctagtgccaaagac |
31937091 |
T |
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