View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_high_62 (Length: 220)
Name: NF9778_high_62
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_high_62 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 33022920 - 33022730
Alignment:
| Q |
13 |
aagcaaaggttaagcaagttttttggacaagtaaaaataataattaagttcttcaataattaatttattgataaaacaattaagaaatgaagaaggaaca |
112 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33022920 |
aagcaaaggttaagcaagtttttttgacaagtaaaaataataattaagttctataataattaatttattgataaaacaattaagaaatgaagaaggaaca |
33022821 |
T |
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| Q |
113 |
gaagaatgagtgagagaagaggatttctgagagtataccttcggtagggtagctcaggaaaacttacagcactgcaagaaataaatgatga |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33022820 |
gaagaatgagtgagagaagaggatttctgagagtataccttcggtagggtagctcaggaaaacttacagcactgcaagaaataaataatga |
33022730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 25659516 - 25659575
Alignment:
| Q |
139 |
ctgagagtataccttcggtagggtagctcaggaaaacttacagcactgcaagaaataaat |
198 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
25659516 |
ctgagagtatacctgcggtagggtggctcaggaaaacttacagcactgcaagaaacaaat |
25659575 |
T |
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