View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9778_high_8 (Length: 512)

Name: NF9778_high_8
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9778_high_8
NF9778_high_8
[»] scaffold0287 (3 HSPs)
scaffold0287 (238-450)||(13301-13513)
scaffold0287 (444-498)||(13828-13882)
scaffold0287 (106-138)||(13172-13204)
[»] chr7 (5 HSPs)
chr7 (238-450)||(3632572-3632784)
chr7 (444-498)||(3632203-3632257)
chr7 (238-304)||(33614352-33614418)
chr7 (238-303)||(22644136-22644201)
chr7 (106-138)||(3632881-3632913)
[»] chr4 (3 HSPs)
chr4 (239-304)||(52457645-52457710)
chr4 (248-300)||(35105978-35106030)
chr4 (260-304)||(34412789-34412833)
[»] chr1 (1 HSPs)
chr1 (238-291)||(38674450-38674503)


Alignment Details
Target: scaffold0287 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 238 - 450
Target Start/End: Original strand, 13301 - 13513
Alignment:
Q  238 tgaagattgctattaaaaattaattatttcattaatttgtaacttcatccaaataaattagaactcannnnnnnattattattcttattgagaagatgac 337  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       |||||||||||||||||| |||||||    
T  13301 tgaagattgctattaaaaattaattatttcattaatttgtgacttcatccaaataaattagaactcatttttttattattattcttattgagtagatgac 13400  T
Q  338 aatattttattagctgtgcaagtgggaaggagtataatatttattacaaccgaccaacatatatagcctgtaattcacatacttctcctttctcaaaaga 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||    
T  13401 aatattttattagctgtgcaagtgggaaggagtataatatttattacaaccgacctacatataaagcctgtaattaacatacttctcctttctcaaaaga 13500  T
Q  438 ataaataaaacat 450  Q
    |||||||||||||    
T  13501 ataaataaaacat 13513  T

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Target: scaffold0287; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 444 - 498
Target Start/End: Original strand, 13828 - 13882
Alignment:
Q  444 aaaacatttctctatagattaatagaagaaagtagatgaaaatcgatacatatat 498  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13828 aaaacatttctctatagattaatagaagaaagaagatgaaaatcgatacatatat 13882  T

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Target: scaffold0287; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 13172 - 13204
Alignment:
Q  106 tattgattctttttagaagtaccaaaatgcccc 138  Q
    |||||||||||||||||||||||||||||||||    
T  13172 tattgattctttttagaagtaccaaaatgcccc 13204  T

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Target: chr7 (Bit Score: 172; Significance: 3e-92; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 238 - 450
Target Start/End: Complemental strand, 3632784 - 3632572
Alignment:
Q  238 tgaagattgctattaaaaattaattatttcattaatttgtaacttcatccaaataaattagaactcannnnnnnattattattcttattgagaagatgac 337  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       |||||||||||||||||| |||||||    
T  3632784 tgaagattgctattaaaaattaattatttcattaatttgtgacttcatccaaataaattagaactcatttttttattattattcttattgagtagatgac 3632685  T
Q  338 aatattttattagctgtgcaagtgggaaggagtataatatttattacaaccgaccaacatatatagcctgtaattcacatacttctcctttctcaaaaga 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||    
T  3632684 aatattttattagctgtgcaagtgggaaggagtataatatttattacaaccgacctacatataaagcctgtaattaacatacttctcctttctcaaaaga 3632585  T
Q  438 ataaataaaacat 450  Q
    |||||||||||||    
T  3632584 ataaataaaacat 3632572  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 444 - 498
Target Start/End: Complemental strand, 3632257 - 3632203
Alignment:
Q  444 aaaacatttctctatagattaatagaagaaagtagatgaaaatcgatacatatat 498  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3632257 aaaacatttctctatagattaatagaagaaagaagatgaaaatcgatacatatat 3632203  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 33614352 - 33614418
Alignment:
Q  238 tgaagattgctattaaaaattaattatttcattaatttgtaacttcatccaaataaattagaactca 304  Q
    ||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  33614352 tgaagattattattaaaaattaattatttcattaatttgtaaattcatccaaataaattataactca 33614418  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 22644136 - 22644201
Alignment:
Q  238 tgaagattgctattaaaaattaattatttcattaatttgtaacttcatccaaataaattagaactc 303  Q
    ||||||||  |||||||||||||| |||||||||||||||||| |||||||||||||||| |||||    
T  22644136 tgaagattattattaaaaattaatcatttcattaatttgtaacgtcatccaaataaattataactc 22644201  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 3632913 - 3632881
Alignment:
Q  106 tattgattctttttagaagtaccaaaatgcccc 138  Q
    |||||||||||||||||||||||||||||||||    
T  3632913 tattgattctttttagaagtaccaaaatgcccc 3632881  T

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Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 52457645 - 52457710
Alignment:
Q  239 gaagattgctattaaaaattaattatttcattaatttgtaacttcatccaaataaattagaactca 304  Q
    |||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52457645 gaagattattatcaaaaattaattatttcattaatttgtaacttcatccaaataaattagaactca 52457710  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 35106030 - 35105978
Alignment:
Q  248 tattaaaaattaattatttcattaatttgtaacttcatccaaataaattagaa 300  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35106030 tattaaaaattaattatttcattaatttgtaatttcatccaaataaattagaa 35105978  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 34412833 - 34412789
Alignment:
Q  260 attatttcattaatttgtaacttcatccaaataaattagaactca 304  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||    
T  34412833 attatttaattaatttgtaatttcatccaaataaattagaactca 34412789  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 38674450 - 38674503
Alignment:
Q  238 tgaagattgctattaaaaattaattatttcattaatttgtaacttcatccaaat 291  Q
    ||||||||  |||||||||||||||||||||| ||||||||||||||| |||||    
T  38674450 tgaagattattattaaaaattaattatttcatcaatttgtaacttcattcaaat 38674503  T

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