View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_high_9 (Length: 480)
Name: NF9778_high_9
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 197 - 462
Target Start/End: Original strand, 42830193 - 42830458
Alignment:
| Q |
197 |
cttgttgaacttgacttcttcagccagcattaggaaactttttcttatgtaatgttattgtaattcttcagtggcttcatgggcacatcacctgatgcgg |
296 |
Q |
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| T |
42830193 |
cttgttgaacttgacttcttcagccagcattaggaaactttttcttatgtaatgttattgtaattcttcagtggcttcatgggcacatcacctgatgcgg |
42830292 |
T |
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| Q |
297 |
gtcagctaatggctttgctcttgaaacttctaaatgctaaaaagacaattgaagtaggagttttcactggatactctcttctactcacagcacttagcat |
396 |
Q |
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| T |
42830293 |
gtcagctaatggctttgctcttgaaacttctaaatgctaaaaagacaattgaagtaggagttttcactggatactctcttctactcacagcacttagcat |
42830392 |
T |
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| Q |
397 |
tccatataatggaaaggtttgtatctgctttcctcctatccatactgtggcttctacagcggaaaa |
462 |
Q |
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| T |
42830393 |
tccatataatggaaaggtttgtatctgctttcctcctatccatactgtggcttctacagtggaaaa |
42830458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 42830001 - 42830164
Alignment:
| Q |
9 |
gagaagcagagactctcaaagagctgagaaatgcaacagcaaatcatcctctgtaattattcttaagactactataccatacatccaacctataaattat |
108 |
Q |
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| T |
42830001 |
gagaagcagagactctcaaagagctgagaaatgcaacagcaaatcatcctctgtaattattcttaagactactataccatacatccaacctataaattat |
42830100 |
T |
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| Q |
109 |
ggaagttgtttaacataacaaaatttgatacgcatacaagatttttcaaacaaaaatagtatga |
172 |
Q |
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| T |
42830101 |
ggaagttgtttaacataacaaaatttgatacgcatacaagatttttcaaacaaaaatagtatga |
42830164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 271 - 417
Target Start/End: Complemental strand, 7589213 - 7589067
Alignment:
| Q |
271 |
cttcatgggcacatca-cctgatgcgggtcagctaatggctttgctcttgaaacttctaaatgctaaaaagacaattgaagtaggagttttcactggata |
369 |
Q |
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| T |
7589213 |
cttcatgggcac-tcatcctgatgcgggtaagttaatgggcatactcttgaagctgttgaatgctaaaaagacaattgaaattggagttttcactggata |
7589115 |
T |
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| Q |
370 |
ctctcttctactcacagcacttagcattccatataatggaaaggtttg |
417 |
Q |
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| T |
7589114 |
ctctcttctactcacagcacttaacattcctgatgatggaaaggtttg |
7589067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 417
Target Start/End: Complemental strand, 34531881 - 34531799
Alignment:
| Q |
335 |
aaaaagacaattgaagtaggagttttcactggatactctcttctactcacagcacttagcattccatataatggaaaggtttg |
417 |
Q |
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| T |
34531881 |
aaaaagacaattgaagttggagtgtttactggatactctcttctcctcactgcactcaacattcccgacgatggaaaggtttg |
34531799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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