View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9778_low_11 (Length: 486)

Name: NF9778_low_11
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9778_low_11
NF9778_low_11
[»] chr7 (1 HSPs)
chr7 (17-482)||(6965501-6965965)
[»] chr4 (4 HSPs)
chr4 (17-482)||(56108229-56108693)
chr4 (17-438)||(20646086-20646515)
chr4 (180-212)||(17737996-17738028)
chr4 (180-212)||(21439958-21439990)
[»] chr6 (1 HSPs)
chr6 (17-482)||(26013996-26014460)
[»] chr2 (4 HSPs)
chr2 (17-482)||(26397352-26397816)
chr2 (20-459)||(25829912-25830350)
chr2 (31-472)||(26459901-26460344)
chr2 (106-176)||(19219945-19220015)
[»] chr3 (2 HSPs)
chr3 (53-469)||(33002229-33002643)
chr3 (180-212)||(54518243-54518275)
[»] scaffold0006 (1 HSPs)
scaffold0006 (17-482)||(276747-277211)
[»] scaffold0182 (1 HSPs)
scaffold0182 (18-482)||(29638-30101)
[»] chr1 (3 HSPs)
chr1 (94-449)||(30400105-30400453)
chr1 (94-449)||(30406662-30407010)
chr1 (290-472)||(845527-845709)
[»] chr5 (1 HSPs)
chr5 (409-482)||(13863709-13863782)


Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 17 - 482
Target Start/End: Complemental strand, 6965965 - 6965501
Alignment:
Q  17 catttggaggttttccacccattgctctaagccatattttcatcaaccatatgaaagtgttcttggtctcatctgagagtaatgcacagccaagtaacct 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6965965 catttggaggttttccacccattgctctaagccatattttcatcaaccatatgaaaatgttcttggtctcatctgagagtaatgcacagccaagtaacct 6965866  T
Q  117 tgattgaaagtgattgtttacaccaataaaaggagcaaatggcattttttacttatttgtggtatatgtagtatcaaatgaaatcacatctccaaactct 216  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6965865 tgattgaaagtgattgtttacaccaataaaaggagcaaatgacattttgtacttatttgtggtatatgtagtatcaaatgaaatcacatctccaaactct 6965766  T
Q  217 tgatagtgttctctaccttttgcatgcgacccaaaatacatttttcatgcgaccctcatcatccatatcaattgcataaaagaatcgtggattttcttct 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6965765 tgatagtgttctctaccttttgcatgcgacccaaaatacatttttcatgcgaccctcatcatccatatcaattgcataaaagaatcctggattttcttct 6965666  T
Q  317 tgcatgagcataaaacaatccaacattgcatttgcatctcctgattctaaagccaaacgccgacctttatctaaatggtttcttacatctttctccaagc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6965665 tgcatgagcataaaacaatccaacattgcatttgcatctcctgattctaaagccaaacgccgacctttatctaaatggtttcttacatctttctccaagc 6965566  T
Q  417 aaccaatgttttcatatcctccatattctttggccattgtggcaaaatttttgcttcttctcactc 482  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  6965565 aaccaatg-tttcatatcctccatattctttggccattgtggcaaaaaatttgcttgttctcactc 6965501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 17 - 482
Target Start/End: Complemental strand, 56108693 - 56108229
Alignment:
Q  17 catttggaggttttccacccattgctctaagccatattttcatcaaccatatgaaagtgttcttggtctcatctgagagtaatgcacagccaagtaacct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56108693 catttggaggttttccacccattgctctaagccatattttcatcaaccatatgaaagtgttcttggtctcatctgagagtaatgcacagccaagtaacct 56108594  T
Q  117 tgattgaaagtgattgtttacaccaataaaaggagcaaatggcattttttacttatttgtggtatatgtagtatcaaatgaaatcacatctccaaactct 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  56108593 tgattgaaagtgattgtttacaccaataaaaggagcaaatggcattttgtacttatttgtgatatatgtagtatcaaatgaaatcacatctccaaactct 56108494  T
Q  217 tgatagtgttctctaccttttgcatgcgacccaaaatacatttttcatgcgaccctcatcatccatatcaattgcataaaagaatcgtggattttcttct 316  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  56108493 tgatagtcttctctaccttttgcatcc-acccaaaatacatttttcatgcgaccctcatcatccatatcaattgcataaaagaatcctggactttcttct 56108395  T
Q  317 tgcatgagcataaaacaatccaacattgcatttgcatctcctgattctaaagccaaacgccgacctttatctaaatggtttcttacatctttctccaagc 416  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56108394 tgcatgagcataaaacaatctaacattgcatttgcatctccagattctaaagccaaacgccgacctttatctaaatggtttcttacatctttctccaagc 56108295  T
Q  417 aaccaatgttttcatatcctccatattctttggccattgtggcaaaatttttgcttcttctcactc 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  56108294 aaccaatgttttcatatcctccatattctttggccattgtggcaaaaattttgcttgttctcactc 56108229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 17 - 438
Target Start/End: Original strand, 20646086 - 20646515
Alignment:
Q  17 catttggaggttttccacccattgctctaagccatattttcatcaaccatatgaaagtgttcttggtctcatctgagagtaatgcacagccaagtaacct 116  Q
    |||||||||| || ||||||||||  ||||||||  |||||| ||||||| ||||||| |    |||||||| ||  ||||||||||  ||||| || ||    
T  20646086 catttggaggcttcccacccattgtcctaagccaagttttcaccaaccatgtgaaagtctctgaggtctcatttgctagtaatgcaccaccaagcaatct 20646185  T
Q  117 tgattgaaagtgattgtttacaccaat---------aaaaggagcaaatggcattttttacttatttgtggtatatgtagtatcaaatgaaatcacatct 207  Q
    ||||||||||||||| || ||||||||         ||| ||||||||||||||||| || || | |||| ||||||| |||||||| || |||||||||    
T  20646186 tgattgaaagtgattattcacaccaatgaagggagcaaatggagcaaatggcattttatatttgtctgtgatatatgttgtatcaaaagatatcacatct 20646285  T
Q  208 ccaaactcttgatagtgttctctaccttttgcatgcgacccaaaatacatttttcatgcgaccctcatcatccatatcaattgcataaaagaatcgtgga 307  Q
    ||||||||||  || |  ||| |||| ||||||| | |||||||||||||||||||  ||||| |||||||||| ||| || ||||||||||||| || |    
T  20646286 ccaaactctttgtaatcatctataccatttgcatcc-acccaaaatacatttttcagacgaccatcatcatccaaatccatcgcataaaagaatcttgaa 20646384  T
Q  308 ttttcttcttgcatgagcataaaacaatccaacattgcatttgcatctcctgattctaaagccaaacgccgacctttatctaaatggtttcttacatctt 407  Q
    |||| ||||||||| ||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||  || | ||||||||| | ||||| | |||||    
T  20646385 tttttttcttgcataagcgtaaaacactccaacattgcatttgcatctcctgattccaaagtcaaacgatgatccttatctaaaagatttctaatatctt 20646484  T
Q  408 tctccaagcaaccaatgttttcatatcctcc 438  Q
    ||||| |||||||||  || |||||||||||    
T  20646485 tctccgagcaaccaactttctcatatcctcc 20646515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 17738028 - 17737996
Alignment:
Q  180 atatgtagtatcaaatgaaatcacatctccaaa 212  Q
    |||||||||||||||||||| ||||||||||||    
T  17738028 atatgtagtatcaaatgaaaccacatctccaaa 17737996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 21439958 - 21439990
Alignment:
Q  180 atatgtagtatcaaatgaaatcacatctccaaa 212  Q
    |||||||||||||||||||| ||||||||||||    
T  21439958 atatgtagtatcaaatgaaaccacatctccaaa 21439990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 17 - 482
Target Start/End: Complemental strand, 26014460 - 26013996
Alignment:
Q  17 catttggaggttttccacccattgctctaagccatattttcatcaaccatatgaaagtgttcttggtctcatctgagagtaatgcacagccaagtaacct 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26014460 catttggaggttttccacccattgctctaagccatattttcatcaaccatatgaaagtgttcttagtctcatctgagagtaatgcacagccaagtaacct 26014361  T
Q  117 tgattgaaagtgattgtttacaccaataaaaggagcaaatggcattttttacttatttgtggtatatgtagtatcaaatgaaatcacatctccaaactct 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26014360 tgattgaaagtgattgtttacaccaataaaaggagcaaatggcattttgtacttatttgtgatatatgtagtatcaaatgaaatcacatctccaaactct 26014261  T
Q  217 tgatagtgttctctaccttttgcatgcgacccaaaatacatttttcatgcgaccctcatcatccatatcaattgcataaaagaatcgtggattttcttct 316  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  26014260 tgatagtcttctctaccttttgcatcc-acccaaaatacatttttcatgcgaccctcatcatccatatcaattgcataaaagaatcctggactttcttct 26014162  T
Q  317 tgcatgagcataaaacaatccaacattgcatttgcatctcctgattctaaagccaaacgccgacctttatctaaatggtttcttacatctttctccaagc 416  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26014161 tgcatgagcataaaacaatccaacattgcatttgcatctccagattctaaagccaaacgccgacctttatctaaatggtttcttacatctttctccaagc 26014062  T
Q  417 aaccaatgttttcatatcctccatattctttggccattgtggcaaaatttttgcttcttctcactc 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  26014061 aaccaatgttttcatatcctccatattctttggccattgtggcaaaaaatttgcttgttctcactc 26013996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 182; Significance: 3e-98; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 17 - 482
Target Start/End: Original strand, 26397352 - 26397816
Alignment:
Q  17 catttggaggttttccacccattgctctaagccatattttcatcaaccatatgaaagtgttcttggtctcatctgagagtaatgcacagccaagtaacct 116  Q
    ||||||||||||| |||||||||||  |||||||| |||||||||||||| ||||| | |    |||||||| ||  ||||||||||| || ||||| ||    
T  26397352 catttggaggtttcccacccattgccttaagccatgttttcatcaaccatttgaaactctcagaggtctcatttgctagtaatgcacaaccgagtaatct 26397451  T
Q  117 tgattgaaagtgattgtttacaccaataaaaggagcaaatggcattttttacttatttgtggtatatgtagtatcaaatgaaatcacatctccaaactct 216  Q
    ||| ||||||||||| || |||||||| || ||||||||||||||||| || || |||||| |||||||||||||||| |||||||||||||||||| ||    
T  26397452 tgactgaaagtgattattcacaccaatgaatggagcaaatggcattttatatttgtttgtgatatatgtagtatcaaaggaaatcacatctccaaacact 26397551  T
Q  217 tgatagtgttctctaccttttgcatgcgacccaaaatacatttttcatgcgaccctcatcatccatatcaattgcataaaagaatcgtggattttcttct 316  Q
    | ||| |  |||||||| ||| ||| | ||||||||||||||||| |  ||||| |||||||||| ||||| |||||||||||||| || ||||||||||    
T  26397552 ttataatcatctctaccctttccatcc-acccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttct 26397650  T
Q  317 tgcatgagcataaaacaatccaacattgcatttgcatctcctgattctaaagccaaacgccgacctttatctaaatggtttcttacatctttctccaagc 416  Q
    |||||  |||||||| | | || |||||| |||||||||||||||||||||  |||||| ||  | ||||||||||  ||||| ||||||||||||||||    
T  26397651 tgcatacgcataaaatactacagcattgcctttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaacatctttctccaagc 26397750  T
Q  417 aaccaatgttttcatatcctccatattctttggccattgtggcaaaatttttgcttcttctcactc 482  Q
    ||||||  || ||||||| ||| | || ||||||||||||||||||  |||||||| |||||||||    
T  26397751 aaccaactttctcatatcttccgtgttgtttggccattgtggcaaagattttgcttgttctcactc 26397816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 20 - 459
Target Start/End: Original strand, 25829912 - 25830350
Alignment:
Q  20 ttggaggttttccacccattgctctaagccatattttcatcaaccatatgaaagtgttcttggtctcatctgagagtaatgcacagccaagtaaccttga 119  Q
    |||||||||| || ||||||||||| |||| | |||||||||||||  ||||| | ||    |||||||||   ||||| || || ||||||||||||||    
T  25829912 ttggaggtttcccgcccattgctctgagccttgttttcatcaaccaagtgaaattatttgacgtctcatctataagtaaagcgcaaccaagtaaccttga 25830011  T
Q  120 ttgaaagtgattgtttacaccaataaaaggagcaaatggcattttttacttatttgtggtatatgtagtatcaaatgaaatcacatctccaaactcttga 219  Q
     ||||||||||| || |||||||||||||||||||||| | |||| |||||||||||| ||||||| ||| | |||||||||||||||||||| |||| |    
T  25830012 ctgaaagtgattattcacaccaataaaaggagcaaatgacgttttgtacttatttgtgatatatgttgtaccgaatgaaatcacatctccaaattcttta 25830111  T
Q  220 tagtgttctctaccttttgcatgcgacccaaaatacatttttcatgcgaccctcatcatccatatcaattgcataaaagaatcgtggattttcttcttgc 319  Q
    || |  |||||||||||||||| | | |||||| |||||| | |  ||| | |||||||||| ||||||||||||||| ||||  |||||||||||||||    
T  25830112 taatcatctctaccttttgcatcc-atccaaaacacatttcttacacgatcttcatcatccaaatcaattgcataaaaaaatctaggattttcttcttgc 25830210  T
Q  320 atgagcataaaacaatccaacattgcatttgcatctcctgattctaaagccaaacgccgacctttatctaaatggtttcttacatctttctccaagcaac 419  Q
    || ||||||||||| ||||||||||   |||| ||||| || ||||| |||||||| |||| |||||||||||| ||||| |  |||||||||||||| |    
T  25830211 ataagcataaaacactccaacattgttgttgcttctcccgactctaatgccaaacgacgacttttatctaaatgatttctaatgtctttctccaagcagc 25830310  T
Q  420 caatgttttcatatcctccatattctttggccattgtggc 459  Q
     |||||||||||| ||||||| || |||||||||||||||    
T  25830311 taatgttttcataccctccatgttgtttggccattgtggc 25830350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 31 - 472
Target Start/End: Complemental strand, 26460344 - 26459901
Alignment:
Q  31 ccacccattgctctaagccatattttcatcaaccatatgaaagtgttcttggtctcatctgagagtaatgcacagccaagtaaccttgattgaaagtgat 130  Q
    |||||||||||||| |||||  ||||||||| |||| ||||||| | |  |||||||| ||  ||||||||||| ||||| || ||||||||||||||||    
T  26460344 ccacccattgctctcagccaagttttcatcacccatgtgaaagtctccgaggtctcatttgctagtaatgcacaaccaagcaatcttgattgaaagtgat 26460245  T
Q  131 tgtttacaccaataaaaggagcaaatggcattttttacttatttgtggtatatgtagtatcaaatgaaatcacatctccaaactcttgatagtgttctct 230  Q
    | || |||||||| || |||||||||| |||||| || || |||||| ||||||| |||||||| || |||||||||||||||||||  || |  ||| |    
T  26460244 tattcacaccaatgaagggagcaaatgacattttatatttgtttgtgatatatgttgtatcaaaagatatcacatctccaaactctttgtaatcatctat 26460145  T
Q  231 accttttgcatgcgacccaaaatacatttttcatgcgac---cctcatcatccatatcaattgcataaaagaatcgtggattttcttcttgcatgagcat 327  Q
    ||| ||||||| | | |||||||||||||||||  ||||   | |||||||||| ||| || ||||||||||||| |||||||| || |||||| ||| |    
T  26460144 accatttgcat-ccatccaaaatacatttttcagacgaccatcatcatcatccaaatccatcgcataaaagaatcttggattttgtttttgcataagcgt 26460046  T
Q  328 aaaacaatccaacattgcatttgcatctcctgattctaaagccaaacgccgacctttatctaaatggtttcttacatctttctccaagcaaccaatgttt 427  Q
    | |||| ||||||||||||||||||||||||||||| |||| |||||| ||| | ||||||||| | ||| | | ||||||||||||||||||||  ||     
T  26460045 acaacattccaacattgcatttgcatctcctgattccaaagtcaaacgacgatccttatctaaaagatttttaatatctttctccaagcaaccaactttc 26459946  T
Q  428 tcatatcctccatattctttggccattgtggcaaaatttttgctt 472  Q
    ||||| ||||| | || ||| || | ||||||||||  |||||||    
T  26459945 tcataccctccgtgttgtttcgcaagtgtggcaaaaaatttgctt 26459901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 19219945 - 19220015
Alignment:
Q  106 ccaagtaaccttgattgaaagtgattgtttacaccaataaaaggagcaaatggcattttttacttatttgt 176  Q
    |||||||||||||| ||||||| ||| || |||||||||||||||| | ||| |||||| |||||||||||    
T  19219945 ccaagtaaccttgactgaaagttattattcacaccaataaaaggagaacatgacattttatacttatttgt 19220015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 53 - 469
Target Start/End: Complemental strand, 33002643 - 33002229
Alignment:
Q  53 ttttcatcaaccatatgaaagtgttcttggtctcatctgagagtaatgcacagccaagtaaccttgattgaaagtgattgtttacaccaataaaaggagc 152  Q
    |||||||||||||  ||||||| | |  ||||||||||   ||||| || || |||| ||||||||| ||||||||||| || |||||||||||||||||    
T  33002643 ttttcatcaaccaagtgaaagtatccgaggtctcatctactagtaaagcgcaaccaaataaccttgactgaaagtgattattcacaccaataaaaggagc 33002544  T
Q  153 aaatggcattttttacttatttgtggtatatgtagtatcaaatgaaatcacatctccaaactcttgatagtgttctctaccttttgcatgcgacccaaaa 252  Q
    |||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||| |||||||| |  |||||||||||||||| | ||||||||    
T  33002543 aaatggcattttgtacttatttgtgatatatgttgtatcgaatgaaatcacatctccaaattcttgataatcatctctaccttttgcat-ccacccaaaa 33002445  T
Q  253 tacatttttcatgcgaccctcatcatccatatcaattgcataaaagaatcgtggattttcttcttgcatgagcataaaacaatccaacattgcatttgca 352  Q
    ||| ||| | |  ||| | |||||||||| ||||||||||||||| ||||  ||||||||||||||||| ||||||||||| ||||||||||   |||||    
T  33002444 tacgtttcttacacgatcttcatcatccaaatcaattgcataaaa-aatctaggattttcttcttgcataagcataaaacactccaacattgttgttgca 33002346  T
Q  353 tctcctgattctaaagccaaacgccgacctttatctaaatggtttcttacatctttctccaagcaaccaatgttttcatatcctccatattctttggcca 452  Q
    ||||| || ||||| |||||||| |||| |||||||||||| ||||| |  |||||||||||||| |||||||||||||| ||||||| || ||||||||    
T  33002345 tctcccgactctaatgccaaacgacgacttttatctaaatgatttctaatgtctttctccaagcatccaatgttttcataccctccatgttgtttggcca 33002246  T
Q  453 ttgtggcaaaatttttg 469  Q
    ||||||| ||| |||||    
T  33002245 ttgtggcgaaaattttg 33002229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 54518275 - 54518243
Alignment:
Q  180 atatgtagtatcaaatgaaatcacatctccaaa 212  Q
    |||||||||||||||||||| ||||||||||||    
T  54518275 atatgtagtatcaaatgaaaccacatctccaaa 54518243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 17 - 482
Target Start/End: Original strand, 276747 - 277211
Alignment:
Q  17 catttggaggttttccacccattgctctaagccatattttcatcaaccatatgaaagtgttcttggtctcatctgagagtaatgcacagccaagtaacct 116  Q
    ||||||||||||| |||||||||||  |||||||| |||||||||||||| ||||| | |    |||||||| ||  ||||||||||| || ||||| ||    
T  276747 catttggaggtttcccacccattgccttaagccatgttttcatcaaccatttgaaactctcagaggtctcatttgctagtaatgcacaaccgagtaatct 276846  T
Q  117 tgattgaaagtgattgtttacaccaataaaaggagcaaatggcattttttacttatttgtggtatatgtagtatcaaatgaaatcacatctccaaactct 216  Q
    ||| ||||||||||| || |||||||| || | ||||||||||||||| || || |||||| |||||||||||||||| |||||||||||||||||| ||    
T  276847 tgactgaaagtgattattcacaccaatgaatgtagcaaatggcattttatatttgtttgtgatatatgtagtatcaaaggaaatcacatctccaaacact 276946  T
Q  217 tgatagtgttctctaccttttgcatgcgacccaaaatacatttttcatgcgaccctcatcatccatatcaattgcataaaagaatcgtggattttcttct 316  Q
    | ||| |  |||||||| ||| ||| | ||||||||||||||||| |  ||||| |||||||||| ||||| |||||||||||||| || ||||||||||    
T  276947 ttataatcatctctaccctttccatcc-acccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttct 277045  T
Q  317 tgcatgagcataaaacaatccaacattgcatttgcatctcctgattctaaagccaaacgccgacctttatctaaatggtttcttacatctttctccaagc 416  Q
    |||||  | |||||| | | || |||||| |||||||||||||||||||||  |||||| ||  | ||||||||||  ||||| ||||||||||||||||    
T  277046 tgcatacgtataaaatacttcagcattgcctttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaacatctttctccaagc 277145  T
Q  417 aaccaatgttttcatatcctccatattctttggccattgtggcaaaatttttgcttcttctcactc 482  Q
    ||||||  || ||||||| ||| | || ||||||||||||||||||  |||||||| |||||||||    
T  277146 aaccaactttctcatatcttccgtgttgtttggccattgtggcaaagattttgcttgttctcactc 277211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 165; Significance: 5e-88; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 18 - 482
Target Start/End: Original strand, 29638 - 30101
Alignment:
Q  18 atttggaggttttccacccattgctctaagccatattttcatcaaccatatgaaagtgttcttggtctcatctgagagtaatgcacagccaagtaacctt 117  Q
    |||||||||||| ||||  |||||  |||||||| ||||||||||||||  |||| | |    |||||||| ||  ||||||||||| || | ||| |||    
T  29638 atttggaggtttcccacatattgccttaagccatgttttcatcaaccattcgaaactctcagaggtctcatttgctagtaatgcacaaccgattaatctt 29737  T
Q  118 gattgaaagtgattgtttacaccaataaaaggagcaaatggcattttttacttatttgtggtatatgtagtatcaaatgaaatcacatctccaaactctt 217  Q
    || ||||||||||| || |||||||| || ||||||||||| ||||| || || |||||| |||||||||||||||| |||||||||||||||||| |||    
T  29738 gactgaaagtgattattcacaccaatgaatggagcaaatggtattttatatttgtttgtgatatatgtagtatcaaaggaaatcacatctccaaacactt 29837  T
Q  218 gatagtgttctctaccttttgcatgcgacccaaaatacatttttcatgcgaccctcatcatccatatcaattgcataaaagaatcgtggattttcttctt 317  Q
     ||| |  |||||||| ||| ||| | ||||||||||||||||| |   |||| |||||||||| ||||| |||||||||||||| || |||||||||||    
T  29838 tataatcatctctaccctttccatcc-acccaaaatacattttttacatgaccatcatcatccaaatcaaatgcataaaagaatcttgaattttcttctt 29936  T
Q  318 gcatgagcataaaacaatccaacattgcatttgcatctcctgattctaaagccaaacgccgacctttatctaaatggtttcttacatctttctccaagca 417  Q
    ||||  |||||||| | |||| ||||||||||||||||||||||||||||  |||||  ||  | ||||||||||  ||||| |||||||||||||||||    
T  29937 gcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacaacggtccttatctaaataatttctaacatctttctccaagca 30036  T
Q  418 accaatgttttcatatcctccatattctttggccattgtggcaaaatttttgcttcttctcactc 482  Q
    |||||  || ||||||||||| | || ||||||||||||||||||  |||||||| |||||||||    
T  30037 accaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgcttgttctcactc 30101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 94 - 449
Target Start/End: Complemental strand, 30400453 - 30400105
Alignment:
Q  94 agtaatgcacagccaagtaaccttgattgaaagtgattgtttacaccaataaaaggagcaaatggcattttttacttatttgtggtatatgtagtatcaa 193  Q
    |||||||| || ||||||||||||||  |||||||||| ||  |||||||||||||||  |||| || | | || ||||||||| |       |||||||    
T  30400453 agtaatgcgcaaccaagtaaccttgaccgaaagtgattattctcaccaataaaaggagggaatgacactatgtatttatttgtgtt-------gtatcaa 30400361  T
Q  194 atgaaatcacatctccaaactcttgatagtgttctctaccttttgcatgcgacccaaaatacatttttcatgcgaccctcatcatccatatcaattgcat 293  Q
    | ||||||||||  |||||||||||||| |  |||||||||||| ||| | || |||||||||||| | |  ||| |||||||||| | ||||||  ||     
T  30400360 acgaaatcacattcccaaactcttgatattcatctctaccttttacat-ctactcaaaatacatttcttacacgatcctcatcatctaaatcaatcacac 30400262  T
Q  294 aaaagaatcgtggattttcttcttgcatgagcataaaacaatccaacattgcatttgcatctcctgattctaaa--gccaaacgccgacctttatctaaa 391  Q
    |||| ||||   |||||| ||||||||| |||||||| || |||||||||||| |||| ||||| || ||||||  |||||| | |||| ||||||||||    
T  30400261 aaaaaaatctaagattttattcttgcataagcataaa-cactccaacattgcagttgcgtctcccgactctaaaaagccaaatgacgacttttatctaaa 30400163  T
Q  392 tggtttcttacatctttctccaagcaaccaatgttttcatatcctccatattctttgg 449  Q
    || ||||| |  ||||||||||||||||||||||||||||||| ||||| || |||||    
T  30400162 tgatttctaatgtctttctccaagcaaccaatgttttcatatcatccatgttgtttgg 30400105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 94 - 449
Target Start/End: Complemental strand, 30407010 - 30406662
Alignment:
Q  94 agtaatgcacagccaagtaaccttgattgaaagtgattgtttacaccaataaaaggagcaaatggcattttttacttatttgtggtatatgtagtatcaa 193  Q
    |||||||| || ||||||||||||||  |||||||||| ||  |||||||||||||||  |||| || | | || ||||||||| |       |||||||    
T  30407010 agtaatgcgcaaccaagtaaccttgaccgaaagtgattattctcaccaataaaaggagggaatgacactatgtatttatttgtgtt-------gtatcaa 30406918  T
Q  194 atgaaatcacatctccaaactcttgatagtgttctctaccttttgcatgcgacccaaaatacatttttcatgcgaccctcatcatccatatcaattgcat 293  Q
    | ||||||||||  |||||||||||||| |  |||||||||||| ||| | || |||||||||||| | |  ||| |||||||||| | ||||||  ||     
T  30406917 acgaaatcacattcccaaactcttgatattcatctctaccttttacat-ctactcaaaatacatttcttacacgatcctcatcatctaaatcaatcacac 30406819  T
Q  294 aaaagaatcgtggattttcttcttgcatgagcataaaacaatccaacattgcatttgcatctcctgattctaaa--gccaaacgccgacctttatctaaa 391  Q
    |||| ||||   |||||| ||||||||| |||||||| || |||||||||||| |||| ||||| || ||||||  |||||| | |||| ||||||||||    
T  30406818 aaaaaaatctaagattttattcttgcataagcataaa-cactccaacattgcagttgcgtctcccgactctaaaaagccaaatgacgacttttatctaaa 30406720  T
Q  392 tggtttcttacatctttctccaagcaaccaatgttttcatatcctccatattctttgg 449  Q
    || ||||| |  ||||||||||||||||||||||||||||||| ||||| || |||||    
T  30406719 tgatttctaatgtctttctccaagcaaccaatgttttcatatcatccatgttgtttgg 30406662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 290 - 472
Target Start/End: Original strand, 845527 - 845709
Alignment:
Q  290 gcataaaagaatcgtggattttcttcttgcatgagcataaaacaatccaacattgcatttgcatctcctgattctaaagccaaacgccgacctttatcta 389  Q
    ||||||||||||| || ||||| ||||||||| ||| ||||||| ||||||||||||||||||||||||||||  |||| |||||| ||| | |||||||    
T  845527 gcataaaagaatcttgaattttgttcttgcataagcgtaaaacactccaacattgcatttgcatctcctgatttcaaagtcaaacgacgatccttatcta 845626  T
Q  390 aatggtttcttacatctttctccaagcaaccaatgttttcatatcctccatattctttggccattgtggcaaaatttttgctt 472  Q
    || | ||| | | |||||| ||| |||||||||  || ||||| ||||| | || ||| || | |||||||||| ||||||||    
T  845627 aaagatttataatatctttttccgagcaaccaactttctcataccctccgtgttgtttcgcaagtgtggcaaaaattttgctt 845709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 409 - 482
Target Start/End: Complemental strand, 13863782 - 13863709
Alignment:
Q  409 ctccaagcaaccaatgttttcatatcctccatattctttggccattgtggcaaaatttttgcttcttctcactc 482  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||  ||||||| |||||||||    
T  13863782 ctccaagcaaccaatgttttcatatctttcatattctttggccattgtggcaaaaaatttgcttgttctcactc 13863709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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