View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_14 (Length: 467)
Name: NF9778_low_14
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 20 - 453
Target Start/End: Complemental strand, 55479347 - 55478915
Alignment:
| Q |
20 |
aactataataaccgtctgattttgatgtatcctattaactcttctccatcttaagccaagttgtagagtgtacatttcatattaaatgattgatttgttt |
119 |
Q |
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| T |
55479347 |
aactataataaccgtctgattttgatgtatcctattaactcttctccatcttaagccaagttgtagagtctacatttcatattaaatgattgatttgttt |
55479248 |
T |
|
| Q |
120 |
tgttttactgagtaattttcattgcatgtataaa--ctacatatgtaacttgaattcaaaattaccactgatatctgaataaaatgatcttcatgtaatc |
217 |
Q |
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| T |
55479247 |
tgttttactgagtaattttcattgcatgtataaattctacatatgtaacttgaattcaaaattaccactgatatctgaataaaatgatcttcatgtaatc |
55479148 |
T |
|
| Q |
218 |
atggtagaaatatcgagatcaagaatattctcataaaggtaagttataaacttgtactatttgccagcctcactagttgtttatggtgaagaacatgtaa |
317 |
Q |
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| T |
55479147 |
atggtagaaatatcgagatcaagaatattctcataaaggtaagttataaacttgtactatttgccagcctcactagttgtttatggtgaagaacatgtaa |
55479048 |
T |
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| Q |
318 |
tcaagtctcaagagtaaaatttcaagtgaaattattaaagagatcgcacatatcatgacatgagtagtaataataggaataataataagtcaggactcta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
55479047 |
tcaagtctcaagagtaaaatttcaagtgaaattattaaagagatcgcacatatcatgacatgagtagtaataat---aagaataataagtcaggactcta |
55478951 |
T |
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| Q |
418 |
aagttgggtattgggatttccatttttcctttgtcc |
453 |
Q |
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| T |
55478950 |
aagttgggtattgggatttccatttttcctttgtcc |
55478915 |
T |
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