View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9778_low_16 (Length: 453)
Name: NF9778_low_16
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_16 |
 | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 408; Significance: 0; HSPs: 32)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 4558910 - 4558479
Alignment:
| Q |
1 |
aactttttaatgaaaaattgttttccttctataacaaaaagtggtgacttgacaagtatgtatcaattattgtgttacatattccttagaatttgagttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4558910 |
aactttttaatgaaaaattgttttccttctataacaaaaagtggtgacttgataagtatgtatcaattattgtgttacatattacttagaatttgagttt |
4558811 |
T |
|
| Q |
101 |
gctttccttgtcttttgtctcttatcttcttttacacaaatccaagaaacattggctttatctttattaaaccattggcttcccttagctcaacattcaa |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4558810 |
gctttccttgacttttgtctcttatcttcttttacacaaatccaagaaacattggctttatctttattaaaccattggcttcccttagctcaacattcaa |
4558711 |
T |
|
| Q |
201 |
acacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaactt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4558710 |
acacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaactt |
4558611 |
T |
|
| Q |
301 |
cttcaccttagaggttttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactg |
400 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4558610 |
cttcaccttagaggatttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactg |
4558511 |
T |
|
| Q |
401 |
attttacctttgagactattccagatggttta |
432 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||| |
|
|
| T |
4558510 |
attttagctttgagactattccggatggttta |
4558479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 90 - 432
Target Start/End: Complemental strand, 4572660 - 4572320
Alignment:
| Q |
90 |
aatttgagtttgctttccttgtcttttgtctcttatcttcttttacacaaatccaagaaacattggctttatctttattaaaccattggcttcccttagc |
189 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| |||| ||||| |
|
|
| T |
4572660 |
aatttgattttgctttccttgtcttttgtctct-atcttcttttccacaaatccaagaaacattggatttatctttattaaaacattggtttcc-ttagc |
4572563 |
T |
|
| Q |
190 |
tcaacattcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaac |
289 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4572562 |
tcaacattcaaacacaaaaactcaataatgagtgataaaaaaccacatgctgtgttaatcccatatccagttcaaggccatatcaatccattgttgcaac |
4572463 |
T |
|
| Q |
290 |
tagcaaaacttcttcaccttagaggttttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttga |
389 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4572462 |
tagcaaaatttcttcaccttagaggttttcacataacctatgtaaacactgaatacaatcacaaacggttgctcaagtcaagaggtcaaaatgcctttga |
4572363 |
T |
|
| Q |
390 |
tggtttcactgattttacctttgagactattccagatggttta |
432 |
Q |
| |
|
||||||||| |||||| |||||||| |||||||||||||||| |
|
|
| T |
4572362 |
tggtttcaccaattttaactttgagagtattccagatggttta |
4572320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 156 - 432
Target Start/End: Complemental strand, 4587260 - 4586986
Alignment:
| Q |
156 |
ctttatctttattaaaccattggcttcccttagctcaacattcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatat |
255 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||| ||||||||||||| |||| ||||||||||| |||||| |||||||||||||| |||| | |
|
|
| T |
4587260 |
ctttatctctattaaaccattggcttccctttgctcaaaattcaaacacaaa--ctcagaaatgagtgattcaaaacctcatgctgtgttaatcccatct |
4587163 |
T |
|
| Q |
256 |
ccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatgtaaacactgaatacaaccacaaac |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
4587162 |
ccagttcaaggccatatcaatccattgttgaaactagctaaacttcttcaccttcgaggatttcacataacctttgtaaacactgaatacaatcacaaac |
4587063 |
T |
|
| Q |
356 |
ggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccagatggttta |
432 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4587062 |
ggttgcttaagtcaagagctccaaatgcctttgatgatttaactgattttagctttgagactattccagatggttta |
4586986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 191 - 435
Target Start/End: Original strand, 4612253 - 4612495
Alignment:
| Q |
191 |
caacattcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaact |
290 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
4612253 |
caacattcaaacacaaa--ctcagaaatgagtgattcaaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaact |
4612350 |
T |
|
| Q |
291 |
agcaaaacttcttcaccttagaggttttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgat |
390 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| | || ||||| |||||||| |||||||| |||||||| |||||||||||||||||||||| | |
|
|
| T |
4612351 |
agcaaaacttcttcaccttagaggctttcacataacattcgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgtt |
4612450 |
T |
|
| Q |
391 |
ggtttcactgattttacctttgagactattccagatggtttacct |
435 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||| ||||| |
|
|
| T |
4612451 |
ggtttcactgattttacctttgaggctataccagatggtctacct |
4612495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 228 - 432
Target Start/End: Complemental strand, 3173561 - 3173357
Alignment:
| Q |
228 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc |
327 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||| |||||||||||| |
|
|
| T |
3173561 |
aaaaccacatgcagtgttaactccatatccagttcaaggccatatcaatgcattgttgaaactagcaaaactacttcactttagaggctttcacataacc |
3173462 |
T |
|
| Q |
328 |
tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccagatg |
427 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| |
|
|
| T |
3173461 |
tttgtaaacactgaatacaatcacaaacggttgctcaaatcaaagggtccaaatgcctttgatggtttcaatgattttaactttgagactataccagatg |
3173362 |
T |
|
| Q |
428 |
gttta |
432 |
Q |
| |
|
||||| |
|
|
| T |
3173361 |
gttta |
3173357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 232 - 432
Target Start/End: Original strand, 4488771 - 4488971
Alignment:
| Q |
232 |
ccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatg |
331 |
Q |
| |
|
|||||||| ||||||| |||| |||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||| ||||||||||||| || |
|
|
| T |
4488771 |
ccacatgcagtgttaacaccatttccagttcaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggatttcacataacctttg |
4488870 |
T |
|
| Q |
332 |
taaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccagatggttt |
431 |
Q |
| |
|
| |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
4488871 |
tcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttaactgattttagctttgagactattccagatggttt |
4488970 |
T |
|
| Q |
432 |
a |
432 |
Q |
| |
|
| |
|
|
| T |
4488971 |
a |
4488971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 232 - 432
Target Start/End: Complemental strand, 4517894 - 4517694
Alignment:
| Q |
232 |
ccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatg |
331 |
Q |
| |
|
|||||||| ||| ||| |||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||| || |
|
|
| T |
4517894 |
ccacatgcagtgataactccatatccacttcaaggccatatcaatccgttgttaaaactagcaaaacttcttcatcttagaggctttcacataacctttg |
4517795 |
T |
|
| Q |
332 |
taaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccagatggttt |
431 |
Q |
| |
|
| ||||| |||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4517794 |
tcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttgagactattccagatggttt |
4517695 |
T |
|
| Q |
432 |
a |
432 |
Q |
| |
|
| |
|
|
| T |
4517694 |
a |
4517694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 226 - 432
Target Start/End: Complemental strand, 4576015 - 4575809
Alignment:
| Q |
226 |
aaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataa |
325 |
Q |
| |
|
||||| |||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| |||||||||| |
|
|
| T |
4576015 |
aaaaagccacatgcagtgttaactccatttccagttcaaggccatatcaatgcattgttgaaaatagcaaaactgcttcaccttagaggctttcacataa |
4575916 |
T |
|
| Q |
326 |
cctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccaga |
425 |
Q |
| |
|
||| ||| |||||||||||||| |||||||| |||||||| ||||||||| |||||||||||||||||||||||| |||| |||||||||||| ||||| |
|
|
| T |
4575915 |
cctttgttaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcactgactttaactttgagactataccaga |
4575816 |
T |
|
| Q |
426 |
tggttta |
432 |
Q |
| |
|
||||||| |
|
|
| T |
4575815 |
tggttta |
4575809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 224 - 429
Target Start/End: Original strand, 4258742 - 4258947
Alignment:
| Q |
224 |
ataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacat |
323 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||| || ||||||||| ||| |||||||||||| |
|
|
| T |
4258742 |
ataaaaagccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagctaagcttcttcactttaaaggttttcacat |
4258841 |
T |
|
| Q |
324 |
aacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattcca |
423 |
Q |
| |
|
||||| ||| ||||||||||| || |||||||| |||||||| ||||||||| ||||||| |||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
4258842 |
aacctttgtcaacactgaatataatcacaaacgtttgctcaaatcaagaggtgaaaatgccgttgatggtttcattgattttacctttgagactattcaa |
4258941 |
T |
|
| Q |
424 |
gatggt |
429 |
Q |
| |
|
|||||| |
|
|
| T |
4258942 |
gatggt |
4258947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 228 - 432
Target Start/End: Complemental strand, 4507469 - 4507265
Alignment:
| Q |
228 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc |
327 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||| || |||||||||||| |||| |||||||||||| |
|
|
| T |
4507469 |
aaaaccacatgctgtgttgattccatatccaactcaaggccatatcaatccattgttcaaactagctaagcttcttcaccttcgaggctttcacataacc |
4507370 |
T |
|
| Q |
328 |
tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccagatg |
427 |
Q |
| |
|
| ||| ||||| |||||||| |||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||| | ||||||| |
|
|
| T |
4507369 |
tttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaatgcctttgatggtttcactgattttaactttgagactctaccagatg |
4507270 |
T |
|
| Q |
428 |
gttta |
432 |
Q |
| |
|
||||| |
|
|
| T |
4507269 |
gttta |
4507265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 228 - 432
Target Start/End: Complemental strand, 4618859 - 4618655
Alignment:
| Q |
228 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc |
327 |
Q |
| |
|
||||||||||| |||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
4618859 |
aaaaccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacc |
4618760 |
T |
|
| Q |
328 |
tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccagatg |
427 |
Q |
| |
|
| ||| ||||| |||||||| |||||||| |||||||| |||||||||||||| || |||||||||||||| || |||| |||||||| |||||||||| |
|
|
| T |
4618759 |
tttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcttttgatggtttcacggactttaactttgagagcattccagatg |
4618660 |
T |
|
| Q |
428 |
gttta |
432 |
Q |
| |
|
||||| |
|
|
| T |
4618659 |
gttta |
4618655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 232 - 432
Target Start/End: Complemental strand, 4627704 - 4627504
Alignment:
| Q |
232 |
ccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatg |
331 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| |||||||||| | |||||||||||||| ||||||||||||| || |
|
|
| T |
4627704 |
ccacatgctgtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaattacttcaccttagaggctttcacataacctttg |
4627605 |
T |
|
| Q |
332 |
taaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccagatggttt |
431 |
Q |
| |
|
| |||||||||||||| |||||||| |||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||||||| |
|
|
| T |
4627604 |
tcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggttt |
4627505 |
T |
|
| Q |
432 |
a |
432 |
Q |
| |
|
| |
|
|
| T |
4627504 |
a |
4627504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 222 - 432
Target Start/End: Complemental strand, 4581578 - 4581368
Alignment:
| Q |
222 |
tgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcac |
321 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||||||| ||||||| ||||||| |||||| | | ||||||||| ||||||||||||||||| |||||| |
|
|
| T |
4581578 |
tgataaaaagccacatgcagtgttgattccatatccacttcaaggacatatcactccattaataacactagcaaagcttcttcaccttagaggctttcac |
4581479 |
T |
|
| Q |
322 |
ataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattc |
421 |
Q |
| |
|
||||||| ||| ||||| |||||||| |||||||| |||||||| |||||||||||||| || |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4581478 |
ataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcgtttgatggtttcaccgattttacctttgagactattc |
4581379 |
T |
|
| Q |
422 |
cagatggttta |
432 |
Q |
| |
|
||||||||||| |
|
|
| T |
4581378 |
cagatggttta |
4581368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 228 - 432
Target Start/End: Original strand, 4513549 - 4513753
Alignment:
| Q |
228 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc |
327 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||||||| |||| | | |||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
4513549 |
aaaaccacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttcagattagcaaaactacttcaccttagaggctttcacataacc |
4513648 |
T |
|
| Q |
328 |
tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccagatg |
427 |
Q |
| |
|
| ||| ||||| |||||||| |||||||| |||||||| ||||||||||| ||||| |||||||||||||| |||||| ||||||||||||||| |||| |
|
|
| T |
4513649 |
tttgttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatg |
4513748 |
T |
|
| Q |
428 |
gttta |
432 |
Q |
| |
|
||||| |
|
|
| T |
4513749 |
gttta |
4513753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 249 - 432
Target Start/End: Complemental strand, 4569607 - 4569428
Alignment:
| Q |
249 |
tccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatgtaaacactgaatacaac |
348 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||| || || |
|
|
| T |
4569607 |
tccatatccacttcaaggccatatcaatccattattgaaactagcaaaacttcttcaccttagaggctttcacataacctttgtcaacaccga----aat |
4569512 |
T |
|
| Q |
349 |
cacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccagatggttta |
432 |
Q |
| |
|
||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4569511 |
cacaaacatttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttgagactattccagatggttta |
4569428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 224 - 432
Target Start/End: Complemental strand, 4623869 - 4623661
Alignment:
| Q |
224 |
ataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacat |
323 |
Q |
| |
|
||||||| |||||||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |||||| ||| |||||||| |
|
|
| T |
4623869 |
ataaaaagccacatgctgtgttgattgcatatccagttcaaggtcatatcaatccattgttcaaactagcaaagcttctttaccttaaaggctttcacat |
4623770 |
T |
|
| Q |
324 |
aacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattcca |
423 |
Q |
| |
|
||||| || |||| |||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||| || |||| ||||||||| |||||| |
|
|
| T |
4623769 |
aacctttggtcacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcctttgatggtttcacggactttaactttgagaccattcca |
4623670 |
T |
|
| Q |
424 |
gatggttta |
432 |
Q |
| |
|
||||||||| |
|
|
| T |
4623669 |
gatggttta |
4623661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 226 - 432
Target Start/End: Complemental strand, 4482425 - 4482219
Alignment:
| Q |
226 |
aaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataa |
325 |
Q |
| |
|
|||||||||||||| ||||| | ||||| ||||| |||||||||||||||| ||||||||||| ||| |||||| |||||||||||||| |||||||||| |
|
|
| T |
4482425 |
aaaaaaccacatgcagtgttgactccatttccagctcaaggccatatcaatgcattgttgaaaataggaaaactacttcaccttagaggctttcacataa |
4482326 |
T |
|
| Q |
326 |
cctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccaga |
425 |
Q |
| |
|
||| ||| ||||| |||||||| |||||||| ||||| || ||||| |||||||| |||||||||||||||||||||||||||||||| || || ||||| |
|
|
| T |
4482325 |
cctttgtcaacaccgaatacaatcacaaacgtttgctaaaatcaaggggtccaaaagcctttgatggtttcactgattttacctttgaaacgataccaga |
4482226 |
T |
|
| Q |
426 |
tggttta |
432 |
Q |
| |
|
||||||| |
|
|
| T |
4482225 |
tggttta |
4482219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 228 - 428
Target Start/End: Complemental strand, 4603668 - 4603468
Alignment:
| Q |
228 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc |
327 |
Q |
| |
|
||||| |||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
4603668 |
aaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacc |
4603569 |
T |
|
| Q |
328 |
tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccagatg |
427 |
Q |
| |
|
| ||| ||||| |||||||| |||||||| |||||||| ||||||||||| |||||||| || || ||||||||||||| |||||| || || ||||||| |
|
|
| T |
4603568 |
tttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagacggcttcactgattttagctttgaaacaatcccagatg |
4603469 |
T |
|
| Q |
428 |
g |
428 |
Q |
| |
|
| |
|
|
| T |
4603468 |
g |
4603468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 228 - 429
Target Start/End: Complemental strand, 4594568 - 4594367
Alignment:
| Q |
228 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc |
327 |
Q |
| |
|
|||||||||||||||||| |||||| |||| ||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4594568 |
aaaaccacatgctgtgttgattccagctccacttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcacataacc |
4594469 |
T |
|
| Q |
328 |
tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccagatg |
427 |
Q |
| |
|
| ||| |||||||||||||| || ||||| |||||||| |||||||||||||||||||| ||||||||| ||| ||||| |||||| || || ||||||| |
|
|
| T |
4594468 |
tttgtcaacactgaatacaatcataaacgtttgctcaaatcaagaggtccaaatgccttagatggtttccctggttttagctttgaaaccataccagatg |
4594369 |
T |
|
| Q |
428 |
gt |
429 |
Q |
| |
|
|| |
|
|
| T |
4594368 |
gt |
4594367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 232 - 431
Target Start/End: Complemental strand, 4462761 - 4462562
Alignment:
| Q |
232 |
ccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatg |
331 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| || |
|
|
| T |
4462761 |
ccacatgctgtgttgattccatgtccatcccaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggttttcacataacctttg |
4462662 |
T |
|
| Q |
332 |
taaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccagatggttt |
431 |
Q |
| |
|
| |||||||||||||| ||||| | |||||||| ||||||||||| ||| | | |||||||||||||| |||| ||||||||| |||||| ||||||| |
|
|
| T |
4462661 |
tcaacactgaatacaatcacaattgcttgctcaattcaagaggtcctaattctctagatggtttcactgactttaactttgagaccattccaaatggttt |
4462562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 232 - 431
Target Start/End: Complemental strand, 4471468 - 4471269
Alignment:
| Q |
232 |
ccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatg |
331 |
Q |
| |
|
||||||||||| || ||||||| ||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| | || |
|
|
| T |
4471468 |
ccacatgctgtattgattccatgtccagctcaaggccatatcaatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttg |
4471369 |
T |
|
| Q |
332 |
taaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccagatggttt |
431 |
Q |
| |
|
| |||||||||||||| |||||| |||||||| ||||||||||| || | |||||||||||||||| |||| ||||||||| |||||| ||||||| |
|
|
| T |
4471368 |
tcaacactgaatacaatcacaaagccttgctcaattcaagaggtcctgattctcttgatggtttcactgactttaactttgagaccattccaaatggttt |
4471269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 232 - 429
Target Start/End: Original strand, 4265631 - 4265828
Alignment:
| Q |
232 |
ccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatg |
331 |
Q |
| |
|
|||||||||||||| |||||| |||| ||||||||||||||||| ||||||| || |||| ||| ||||||||||||||||| ||||||||||||| || |
|
|
| T |
4265631 |
ccacatgctgtgttgattccagctccatttcaaggccatatcaatgcattgttcaatctaggaaagcttcttcaccttagaggctttcacataacctttg |
4265730 |
T |
|
| Q |
332 |
taaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccagatggt |
429 |
Q |
| |
|
| |||||||||||||| |||||||| |||||||| ||||||||||||||| | |||||||||||| ||| |||| |||||||| || ||||||||| |
|
|
| T |
4265731 |
tcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaattctcttgatggtttcagtgactttaagtttgagaccataccagatggt |
4265828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 244 - 432
Target Start/End: Complemental strand, 4562204 - 4562016
Alignment:
| Q |
244 |
ttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacat-aacctatgtaaacactgaa |
342 |
Q |
| |
|
|||| ||||| |||||||||||| ||||||||| ||||||||||| |||||||||| |||||||| ||||| |||||||| ||||| ||| ||||||||| |
|
|
| T |
4562204 |
ttaactccatttccagttcaaggtcatatcaatgcattgttgaaaatagcaaaactgcttcacctaagaggctttcacataaacctttgttaacactgaa |
4562105 |
T |
|
| Q |
343 |
tacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccagatggttta |
432 |
Q |
| |
|
||||| |||||||| ||||| || ||||||||| |||||||||||||||||||||||| |||| |||||||||||| |||||||||||| |
|
|
| T |
4562104 |
tacaatcacaaacgtttgct-aaatcaagaggtgaaaatgcctttgatggtttcactgactttaactttgagactataccagatggttta |
4562016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 228 - 394
Target Start/End: Complemental strand, 4565587 - 4565421
Alignment:
| Q |
228 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc |
327 |
Q |
| |
|
|||||||||||||||||| |||||| |||| ||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
4565587 |
aaaaccacatgctgtgttgattccagctccatttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcatataacc |
4565488 |
T |
|
| Q |
328 |
tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtt |
394 |
Q |
| |
|
| ||| |||||||||||||| || ||||| ||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
4565487 |
tttgtcaacactgaatacaatcataaacgattgctaaaatcaagaggtccaaatgccttagatggtt |
4565421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 189 - 432
Target Start/End: Complemental strand, 4599758 - 4599517
Alignment:
| Q |
189 |
ctcaacattcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaa |
288 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||| |||||||| |||||| || || ||||||| ||| ||||||| ||||||||| ||| | ||| |
|
|
| T |
4599758 |
ctcaacattcaaacacaaa--ctcacaaatgagtggtaaaaaactacatgcagtattgattccattaccaattcaaggaaatatcaatctattaatcaaa |
4599661 |
T |
|
| Q |
289 |
ctagcaaaacttcttcaccttagaggttttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttg |
388 |
Q |
| |
|
|||||||| |||||||||||||||| ||| ||||||||| || ||||| || ||||| |||||||| |||||||| ||||||||||| ||| | | |
|
|
| T |
4599660 |
ctagcaaagattcttcaccttagaggattttacataaccttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctcgta |
4599561 |
T |
|
| Q |
389 |
atggtttcactgattttacctttgagactattccagatggttta |
432 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
4599560 |
atggtttcactgatttttccttcgagactattccagatggttta |
4599517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 308 - 432
Target Start/End: Original strand, 4502943 - 4503067
Alignment:
| Q |
308 |
ttagaggttttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttac |
407 |
Q |
| |
|
||||||| ||||||||||||| ||| ||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4502943 |
ttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttac |
4503042 |
T |
|
| Q |
408 |
ctttgagactattccagatggttta |
432 |
Q |
| |
|
||||||||| || |||||||||||| |
|
|
| T |
4503043 |
ctttgagaccataccagatggttta |
4503067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 232 - 399
Target Start/End: Original strand, 4255395 - 4255550
Alignment:
| Q |
232 |
ccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatg |
331 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| ||| || |||||||||||| | ||||| |||| ||| || || |
|
|
| T |
4255395 |
ccacatgctgtgttgattccatatccagttcaaggccatatcaatctattattcaaactagcaaaattacttcatcttaaagg------------ctttg |
4255482 |
T |
|
| Q |
332 |
taaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcact |
399 |
Q |
| |
|
| ||||| |||||||| |||||||| |||||| | |||||||||||||| ||||||||||||| |||| |
|
|
| T |
4255483 |
tcaacaccgaatacaatcacaaacgcttgctcgaatcaagaggtccaaaagcctttgatggttccact |
4255550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 226 - 312
Target Start/End: Original strand, 4497813 - 4497899
Alignment:
| Q |
226 |
aaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttaga |
312 |
Q |
| |
|
||||| |||||||| ||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||| | |||||||||||| |
|
|
| T |
4497813 |
aaaaagccacatgcagtgttaactccatttccaatttaaggccatatcaatccattgttgaaactaggaaaattacttcaccttaga |
4497899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 4572785 - 4572706
Alignment:
| Q |
1 |
aactttttaatgaaaaattgttttccttctat-----aacaaaaagtggtgacttgacaagtatgtatcaattattgtgt |
75 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
4572785 |
aactttttaatgaaaaattgttttccttctctcacgtaacaaaaagtggtgacttgactagtatgcatcaattattgtgt |
4572706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 429
Target Start/End: Original strand, 4298174 - 4298269
Alignment:
| Q |
334 |
aacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccagatggt |
429 |
Q |
| |
|
||||| |||||||| ||||||| ||||| | ||||| |||||||| || |||||||||||||| | |||| |||||||||||||||||||||| |
|
|
| T |
4298174 |
aacaccgaatacaatcacaaacacctgctcgaatcaaggggtccaaaagcttttgatggtttcaccaactttagctttgagactattccagatggt |
4298269 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 4587307 - 4587258
Alignment:
| Q |
1 |
aactttttaatgaaaaattgttttccttctataacaaaaagtggtgactt |
50 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||| |||| |
|
|
| T |
4587307 |
aactttttaatgaaaaattgatttccttttataacaaaaagtggtcactt |
4587258 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 4493463 - 4493401
Alignment:
| Q |
228 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaact |
290 |
Q |
| |
|
|||||||||||| ||||| ||||||| ||||| |||||| ||||||||| || || ||||||| |
|
|
| T |
4493463 |
aaaaccacatgcagtgttgattccatttccagctcaaggtcatatcaatgcaatgctgaaact |
4493401 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 131; Significance: 9e-68; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 226 - 432
Target Start/End: Complemental strand, 2384 - 2178
Alignment:
| Q |
226 |
aaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataa |
325 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
2384 |
aaaaaaccacatgctgtgttgattccatatccagttcaaggccatatcaatccattattcaaactagcaaagcttcttcaccttagaggctttcacataa |
2285 |
T |
|
| Q |
326 |
cctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccaga |
425 |
Q |
| |
|
||| ||| |||||||||||||| || ||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||| ||| ||||||||||| || |
|
|
| T |
2284 |
cctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttttgcttcgagactattcccga |
2185 |
T |
|
| Q |
426 |
tggttta |
432 |
Q |
| |
|
||||||| |
|
|
| T |
2184 |
tggttta |
2178 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 228 - 429
Target Start/End: Complemental strand, 1282991 - 1282790
Alignment:
| Q |
228 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc |
327 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| |||||||| |
|
|
| T |
1282991 |
aaaaccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacc |
1282892 |
T |
|
| Q |
328 |
tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccagatg |
427 |
Q |
| |
|
| ||| || ||||||||||| |||||||| |||||||| |||||||||||||||||| | ||||||||||||||||||| |||||| || || ||||||| |
|
|
| T |
1282891 |
tttgttaatactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgccctagatggtttcactgattttagctttgaaaccatcccagatg |
1282792 |
T |
|
| Q |
428 |
gt |
429 |
Q |
| |
|
|| |
|
|
| T |
1282791 |
gt |
1282790 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 356
Target Start/End: Complemental strand, 35776320 - 35776276
Alignment:
| Q |
312 |
aggttttcacataacctatgtaaacactgaatacaaccacaaacg |
356 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
35776320 |
aggttttcacataacctttgtgaacactgaattcaaccacaaacg |
35776276 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 356
Target Start/End: Complemental strand, 35842126 - 35842083
Alignment:
| Q |
313 |
ggttttcacataacctatgtaaacactgaatacaaccacaaacg |
356 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
35842126 |
ggttttcacataacctttgtgaacactgaattcaaccacaaacg |
35842083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 356
Target Start/End: Complemental strand, 35854634 - 35854591
Alignment:
| Q |
313 |
ggttttcacataacctatgtaaacactgaatacaaccacaaacg |
356 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
35854634 |
ggttttcacataacctttgtgaacactgaattcaaccacaaacg |
35854591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 356
Target Start/End: Complemental strand, 35869243 - 35869200
Alignment:
| Q |
313 |
ggttttcacataacctatgtaaacactgaatacaaccacaaacg |
356 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
35869243 |
ggttttcacataacctttgtgaacactgaattcaaccacaaacg |
35869200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 228 - 429
Target Start/End: Complemental strand, 1316 - 1115
Alignment:
| Q |
228 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc |
327 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | ||| ||||| |
|
|
| T |
1316 |
aaaatcacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacc |
1217 |
T |
|
| Q |
328 |
tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccagatg |
427 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||||||| ||||||||||||| |||||| ||||||||||||||||||| |||||| || || ||||||| |
|
|
| T |
1216 |
tatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttgaaaccatcccagatg |
1117 |
T |
|
| Q |
428 |
gt |
429 |
Q |
| |
|
|| |
|
|
| T |
1116 |
gt |
1115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 8e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 228 - 429
Target Start/End: Complemental strand, 1676079 - 1675878
Alignment:
| Q |
228 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc |
327 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | ||| ||||| |
|
|
| T |
1676079 |
aaaatcacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacc |
1675980 |
T |
|
| Q |
328 |
tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccagatg |
427 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||||||| ||||||||||||| |||||| ||||||||||||||||||| |||||| || || ||||||| |
|
|
| T |
1675979 |
tatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttgaaaccatcccagatg |
1675880 |
T |
|
| Q |
428 |
gt |
429 |
Q |
| |
|
|| |
|
|
| T |
1675879 |
gt |
1675878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 226 - 430
Target Start/End: Original strand, 20862378 - 20862582
Alignment:
| Q |
226 |
aaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataa |
325 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| ||||||| |||||||||||| |||| |||||||||||||| |||||||||||||| ||| |||||| |
|
|
| T |
20862378 |
aaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataa |
20862477 |
T |
|
| Q |
326 |
cctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccaga |
425 |
Q |
| |
|
| | ||| || ||||||||||| |||||||| ||||| ||||||| ||||||| ||||||||||||||||||| ||| ||||||||| ||||||| |
|
|
| T |
20862478 |
catttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcgctttgagaccgttccaga |
20862577 |
T |
|
| Q |
426 |
tggtt |
430 |
Q |
| |
|
||||| |
|
|
| T |
20862578 |
tggtt |
20862582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 228 - 432
Target Start/End: Original strand, 2021 - 2225
Alignment:
| Q |
228 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc |
327 |
Q |
| |
|
||||||||||| |||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
2021 |
aaaaccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacc |
2120 |
T |
|
| Q |
328 |
tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccagatg |
427 |
Q |
| |
|
| ||| |||||||||||||| || ||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||| ||| ||||||||||| |||| |
|
|
| T |
2121 |
tttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttttgcttcgagactattcccgatg |
2220 |
T |
|
| Q |
428 |
gttta |
432 |
Q |
| |
|
||||| |
|
|
| T |
2221 |
gttta |
2225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 222 - 429
Target Start/End: Complemental strand, 3088309 - 3088102
Alignment:
| Q |
222 |
tgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcac |
321 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
3088309 |
tgataaaaagccacatgctgtgttgattccatatccacttcaaggtcatataaatccattgttaaaactagcaaaacttcttcaccttaaaggctttcac |
3088210 |
T |
|
| Q |
322 |
ataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattc |
421 |
Q |
| |
|
||||||| ||| || || |||||||| ||||| || ||||| || ||||||||| | ||| | |||||||||||||||||||| |||||||||||| | |
|
|
| T |
3088209 |
ataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtctttgagactatcc |
3088110 |
T |
|
| Q |
422 |
cagatggt |
429 |
Q |
| |
|
||||||| |
|
|
| T |
3088109 |
aagatggt |
3088102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 235 - 429
Target Start/End: Complemental strand, 24104646 - 24104452
Alignment:
| Q |
235 |
catgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatgtaa |
334 |
Q |
| |
|
||||||||||| |||||| |||| ||||||| ||||||||| ||||||| ||||||| ||| ||||||||||||||||| ||||||||||||| || | |
|
|
| T |
24104646 |
catgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcaccttagaggctttcacataaccttcgtga |
24104547 |
T |
|
| Q |
335 |
acactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttgagactattccagatggt |
429 |
Q |
| |
|
|||| |||||||| |||||||| |||||| | ||||||| ||| ||| | |||||||||||| ||| |||| ||||||||| || ||||||||| |
|
|
| T |
24104546 |
acaccgaatacaatcacaaacgcttgctcgaatcaagagatcctaattctcttgatggtttcaatgactttaactttgagaccataccagatggt |
24104452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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