View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_19 (Length: 416)
Name: NF9778_low_19
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 17 - 406
Target Start/End: Complemental strand, 8457908 - 8457519
Alignment:
| Q |
17 |
aaaatgaaaaagaaatattgaaaggccaatgtattcatatacttagtaaccaaaaagtattcatttatttgatgaattagaattttaagcagtatacctt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457908 |
aaaatgaaaaagaaatattgaaaggccaatgtattcatatacttagtaaccaaaaagtattcatttatttgatgaattagaattttaagcagtatacctt |
8457809 |
T |
|
| Q |
117 |
ggttatagtccaaagtagaaccgttgtagttgcatgtatcccaatactccccaacagataacagtggctttgctccttcaatatattctttcacatattt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
8457808 |
ggttatagtccaaagtagaaccgttgtagttgcatgtatcccaatactccccaacagataacattggctttggtccttcaatatattctttcacatattt |
8457709 |
T |
|
| Q |
217 |
tggtgaatatctaccaatgacagaattgaggtataaaactatatataactcctgaatatataaagcaagaagccaaaggaaaaccctcaatattctaaag |
316 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457708 |
tggtgaatatctacaaatgacagaattgaggtataaaactatatataactcctgaatatataaagcaagaagccaaaggaaaaccctcaatattctaaag |
8457609 |
T |
|
| Q |
317 |
gtgtagtgtagcacatcttacccttttgcataatcaaaacgaaaatcctgaaagcctacattatggcgaagccactgaagccatcctatg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457608 |
gtgtagtgtagcacatcttacccttttgcataatcaaaacgaaaatcctgaaagcctacattatggcgaagccactgaagccatcctatg |
8457519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 406
Target Start/End: Original strand, 6827434 - 6827811
Alignment:
| Q |
19 |
aatgaaaaagaaatattgaaaggccaatgtattcatatacttagtaaccaaaaagtattcatttatttgatgaattagaattttaagcagtataccttgg |
118 |
Q |
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|||| ||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| |
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| T |
6827434 |
aatgcaaaagaagtattgaaagggtaatgtattcacatacttagtaaccaaaaagtattcatttatttcatgaatgagaattttaagca---taccttgg |
6827530 |
T |
|
| Q |
119 |
ttatagtccaaagtagaaccgttgtagttgcatgtatcccaatactccccaacagataacagtggctttgctccttcaatatattctttcacatattttg |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||| | ||||||||||||||| ||||| |||||||||| |
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| T |
6827531 |
ttatagtccaaagtagaaccgttgtagttgcaaacatccaaatactccccgacagataacagtggttgtgctccttcaatatagtctttaacatattttg |
6827630 |
T |
|
| Q |
219 |
gtgaatatctaccaatgacagaattgag--gtataaaactatatataactcctgaatatataaagcaagaagccaaa-ggaaaaccctcaatattctaaa |
315 |
Q |
| |
|
||||||| |||| ||||||||||||||| || |||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||| ||| ||| |
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| T |
6827631 |
gtgaatagctacaaatgacagaattgagaggtgtaaaactatag----ctcctgaatatataaagtaagaagccaaaaggaaaacaatcaattttcaaaa |
6827726 |
T |
|
| Q |
316 |
ggtgtagtgtagcacatcttacccttttgcataatcaaaacgaaaatcctgaaagcctacattatggcgaagccactgaagccatcctatg |
406 |
Q |
| |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6827727 |
ggtgtag-----cacatcttacccttt-gcataatcaaaacgaaaatcctgaaagcccacattatggcgaagccactgaagccatcctatg |
6827811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 406
Target Start/End: Original strand, 27964078 - 27964454
Alignment:
| Q |
19 |
aatgaaaaagaaatattgaaaggccaatgtattcatatacttagtaaccaaaaagtattcatttatttgatgaattagaattttaagcagtataccttgg |
118 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| |
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| T |
27964078 |
aatgcaaaagaagtattgaaagggtaatgtattcacatacttagtaaccaaaaagtattcatttattc-atgaatgagaattttaagca---taccttgg |
27964173 |
T |
|
| Q |
119 |
ttatagtccaaagtagaaccgttgtagttgcatgtatcccaatactccccaacagataacagtggctttgctccttcaatatattctttcacatattttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| | |
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| T |
27964174 |
ttatagtccaaagtagaaccgttgtagttgcaaacatccaaatactccccgacagataacagtggctttgctccttcaatatactctttaacatatttag |
27964273 |
T |
|
| Q |
219 |
gtgaatatctaccaatgacagaatt--gaggtataaaactatatataactcctgaatatataaagcaagaagcc-aaaggaaaaccctcaatattctaaa |
315 |
Q |
| |
|
||||||| |||| |||||||||||| ||||||||||| |||| ||||||||||||||||| |||||||| |||||||||| ||||||||| ||| |
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| T |
27964274 |
gtgaatagctacaaatgacagaattgagaggtataaaa----ttatagctcctgaatatataaagtaagaagccaaaaggaaaacaatcaatattcaaaa |
27964369 |
T |
|
| Q |
316 |
ggtgtagtgtagcacatcttacccttttgcataatcaaaacgaaaatcctgaaagcctacattatggcgaagccactgaagccatcctatg |
406 |
Q |
| |
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| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27964370 |
g-----gtgtagcacatcttaccc-tttgcataatcaaaacgaaaatcctgaaagcccacattatggcgaagccactgaagccatcctatg |
27964454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 406
Target Start/End: Complemental strand, 9822710 - 9822333
Alignment:
| Q |
19 |
aatgaaaaagaaatattgaaaggccaatgtattcatatacttagtaaccaaaaagtattcatttatttgatgaattagaattttaagcagtataccttgg |
118 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| |
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| T |
9822710 |
aatgcaaaagaagtattgaaagggtaatgtattcacatacttagtaaccaaaaagtattcatttatttcatgaatgagaattttaagca---taccttgg |
9822614 |
T |
|
| Q |
119 |
ttatagtccaaagtagaaccgttgtagttgcatgtatcccaatactccccaacagataacagtggctttgctccttcaatatattctttcacatattttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||| | ||||||||||||||| ||||| |||||||||| |
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| T |
9822613 |
ttatagtccaaagtagaaccgttgtagttgcaaacatccaaatactccccgacagataacagtggttgtgctccttcaatatagtctttaacatattttg |
9822514 |
T |
|
| Q |
219 |
gtgaatatctaccaatgacagaattgag--gtataaaactatatataactcctgaatatataaagcaagaagccaaa-ggaaaaccctcaatattctaaa |
315 |
Q |
| |
|
||||||| |||| ||||||||||||||| || |||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||| ||| ||| |
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| T |
9822513 |
gtgaatagctacaaatgacagaattgagaggtgtaaaactatag----ctcctgaatatataaagtaagaagccaaaaggaaaacaatcaattttcaaaa |
9822418 |
T |
|
| Q |
316 |
ggtgtagtgtagcacatcttacccttttgcataatcaaaacgaaaatcctgaaagcctacattatggcgaagccactgaagccatcctatg |
406 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
9822417 |
ggtgtag-----cacatcttacccttt-gcataatcaaaacgaaaatcctgaaagcccacattatggcaaagccactgaagccatcctatg |
9822333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 18361362 - 18361425
Alignment:
| Q |
24 |
aaaagaaatattgaaaggccaatgtattcatatacttagtaaccaaaaagtattcatttatttg |
87 |
Q |
| |
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||||||| |||||||||| |||||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
18361362 |
aaaagaagtattgaaagggtaatgtattcacatgcttagtaaccaaaaagtattcatttatttg |
18361425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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