View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_2 (Length: 612)
Name: NF9778_low_2
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 19 - 594
Target Start/End: Original strand, 31383219 - 31383787
Alignment:
| Q |
19 |
catacctctccacaacaacctctatcaaaacttcaaccaccaaagtcaaacaaaaacctcgctagttaggattggcaaccctaaaacgaatctacaacac |
118 |
Q |
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| T |
31383219 |
catacctctccacaacaacctcaatcaaaacttcaaccaccaaagtcaaacaaaaacctcgcaagttaggattggcaaccctaagacgaatctacaacac |
31383318 |
T |
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| Q |
119 |
ttaggcatgacttcaattataacaataaaacaaggtatgaaggcggcaacaccaccc-atacctaaacaaatccaatcctctcgcacagaggagccaatt |
217 |
Q |
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| T |
31383319 |
ctagtcatgacttcagtta--------aaacaaggtatgaaggcggcaacaccaccccatacctaaacaaatccaatcctctcgcacagaggagccaatt |
31383410 |
T |
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| Q |
218 |
ttgaaacatgcaggcacaatagatgtagcgacgaaaaaccatcaaccatttagaaaaactctatatccaacacgaaatttgacaaaataatccgattgaa |
317 |
Q |
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| T |
31383411 |
ttgaaacatgcaggcacaatagatgtagcgacgaaaaaccatcaaccatttagaaaaactctatatccaacacgaaatttgacaaaaggattcgattgaa |
31383510 |
T |
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| Q |
318 |
ctgccgccaccacgcaacaaacgaataaaatcattattgagaaccacgaagcaaatcaagatccacgaaacaaacgccatcgacaatgagaattaccgac |
417 |
Q |
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| T |
31383511 |
ctgctgccaccacgtagcaaacgaataaaatcattattaaaaaccacgaagcaaatcaagatccacgaaacaaacgccatcgacaacgagaattaccgac |
31383610 |
T |
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| Q |
418 |
gccgtttgaaaacaaaccataataaacctcaatatattatattttgaagggaattttgaagaagatagattatttttctctttcaaattaagtataaatt |
517 |
Q |
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| T |
31383611 |
gccgtttgaaaacaaaccataataaacctcaatatattatattttggagggaattttgaagaatatagattatttttctctttcaaattaagtataaatt |
31383710 |
T |
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| Q |
518 |
aaaaatgacatatcataatatattattttcattttctttatggaaagcattttcaaaatatatttacatacatcaat |
594 |
Q |
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| T |
31383711 |
aaaaatgacatatcataatatattattttcattttctttatggaaagcattttcaaaatatatttacatacatcaat |
31383787 |
T |
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