View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_21 (Length: 409)
Name: NF9778_low_21
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 66 - 391
Target Start/End: Complemental strand, 11679855 - 11679529
Alignment:
| Q |
66 |
taaagaaacgataaaacgaattgtagattaaccggatacataaatttatataaaatgtggtgcaatattatcaacataaactgtcgatgttttgtcctcc |
165 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11679855 |
taaagaaacgataaaatgaattgtagattaaccgaatacattaatttatataaaatgtggtgcaatattatcaacataaattgtcgatgttttgtcctcc |
11679756 |
T |
|
| Q |
166 |
atataaaatatataagacatatatttatgaaagacaaattatc-----catgtttattgaagtcaagtgagtgtagataccttctaacaataattcttca |
260 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||| ||||||||||||| |
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| T |
11679755 |
atataaaatataaaagacatatatttatgaaagacaaattatccaatacatgtttattgaagtcaaatcagtgtagataccttctatcaataattcttca |
11679656 |
T |
|
| Q |
261 |
attatttgagacacattttatgcaatnnnnnnnnnnnnnnnncaacttcttgatggaatgaggtatgggaggtggtgagtgaatggtgtgcagtagaagt |
360 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11679655 |
attatttgagacacattttatgcaat----aaaaacaaaaaacaacttcttgatggaatgaggtatgggaggtggtgagtgaatggtgtgcagtagaagt |
11679560 |
T |
|
| Q |
361 |
gagatgcctgatatggaggtatgtctggaac |
391 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
11679559 |
gagatgcctgatatggaggtatgtctggaac |
11679529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 66 - 391
Target Start/End: Complemental strand, 11688134 - 11687808
Alignment:
| Q |
66 |
taaagaaacgataaaacgaattgtagattaaccggatacataaatttatataaaatgtggtgcaatattatcaacataaactgtcgatgttttgtcctcc |
165 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11688134 |
taaagaaacgataaaatgaattgtagattaaccgaatacattaatttatataaaatgtggtgcaatattatcaacataaattgtcgatgttttgtcctcc |
11688035 |
T |
|
| Q |
166 |
atataaaatatataagacatatatttatgaaagacaaattatc-----catgtttattgaagtcaagtgagtgtagataccttctaacaataattcttca |
260 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||| ||||||||||||| |
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| T |
11688034 |
atataaaatataaaagacatatatttatgaaagacaaattatccaatacatgtttattgaagtcaaatcagtgtagataccttctatcaataattcttca |
11687935 |
T |
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| Q |
261 |
attatttgagacacattttatgcaatnnnnnnnnnnnnnnnncaacttcttgatggaatgaggtatgggaggtggtgagtgaatggtgtgcagtagaagt |
360 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11687934 |
attatttgagacacattttatgcaat----aaaaacaaaaaacaacttcttgatggaatgaggtatgggaggtggtgagtgaatggtgtgcagtagaagt |
11687839 |
T |
|
| Q |
361 |
gagatgcctgatatggaggtatgtctggaac |
391 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
11687838 |
gagatgcctgatatggaggtatgtctggaac |
11687808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 193
Target Start/End: Original strand, 14337008 - 14337089
Alignment:
| Q |
112 |
tatataaaatgtggtgcaatattatcaacataaactgtcgatgttttgtcctccatataaaatatataagacatatatttat |
193 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||| | | |||||||||| ||| |||||| || ||||||||||||||| |
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| T |
14337008 |
tatataaaatgtggtgcaatattatccatataaactattggtgttttgtccaccacgtaaaatttaaaagacatatatttat |
14337089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 11694614 - 11694578
Alignment:
| Q |
12 |
acagattaggggttacgagattaagggagtttaattt |
48 |
Q |
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| T |
11694614 |
acagattaggggttacgagattaagggagtttaattt |
11694578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 14336575 - 14336619
Alignment:
| Q |
76 |
ataaaacgaattgtagattaaccggatacataaatttatataaaa |
120 |
Q |
| |
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|||||| |||||||||||||||| || ||||| |||||||||||| |
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| T |
14336575 |
ataaaatgaattgtagattaaccagagacatatatttatataaaa |
14336619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 35670067 - 35669977
Alignment:
| Q |
103 |
acataaatttatataaaatgtggtgcaatattatcaacataaactgtcgatgttttgtcctccatataaaatatataagacatatatttat |
193 |
Q |
| |
|
||||| |||||||| || |||||||||||||||| ||||||||||||| || ||||||| ||| |||||| ||| ||||||| ||||||| |
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| T |
35670067 |
acatatatttatattgaacgtggtgcaatattatccacataaactgtcggtgctttgtccaccacataaaacataaaagacatctatttat |
35669977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 5998130 - 5998175
Alignment:
| Q |
115 |
ataaaatgtggtgcaatattatcaacataaactgtcgatgttttgt |
160 |
Q |
| |
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||||||| ||||||||||||||| ||||||| ||||| |||||||| |
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| T |
5998130 |
ataaaatatggtgcaatattatccacataaattgtcggtgttttgt |
5998175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 1555592 - 1555515
Alignment:
| Q |
68 |
aagaaacgataaaacgaattgtagattaaccggatacataaatttatataaaatgtggtgcaatattatcaacataaa |
145 |
Q |
| |
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||||||| |||||| |||||||| |||||| ||| ||||| ||||||||||||| ||||||||||||| ||||||| |
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| T |
1555592 |
aagaaactataaaatgaattgtatattaactggagacatatatttatataaaatacagtgcaatattatccacataaa |
1555515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 23502823 - 23502742
Alignment:
| Q |
109 |
atttatataaaatgtggtgcaatattatcaacataaactgtcgatgttttgtcctccatataaaatatataagacatatatt |
190 |
Q |
| |
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||||||||||||| |||||||||| ||| ||||||| ||||| |||||||||| || ||||| |||| |||||||||||| |
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| T |
23502823 |
atttatataaaatctggtgcaataatattcacataaattgtcggtgttttgtccatcaaataaactataaaagacatatatt |
23502742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 928067 - 927976
Alignment:
| Q |
103 |
acataaatttatataaaatgtggtgcaatattatcaacataaactgtcgatgttttgtcctccatataaaatatata-agacatatatttat |
193 |
Q |
| |
|
||||| ||||||||||||||| | ||||| ||||| ||||||| ||||| || ||| ||| |||||||||| ||| | | |||||||||||| |
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| T |
928067 |
acatatatttatataaaatgttgggcaattttatccacataaattgtcgttgctttttccaccatataaaacataaagaaacatatatttat |
927976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 27731724 - 27731666
Alignment:
| Q |
89 |
tagattaaccggatacataaatttatataaaatgtggtgcaatattatcaacataaact |
147 |
Q |
| |
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||||||||| ||| ||||| ||||||||||||||| ||||||||||| ||||||||| |
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| T |
27731724 |
tagattaactggagacatatatttatataaaatgttttgcaatattattcacataaact |
27731666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 31431012 - 31431082
Alignment:
| Q |
75 |
gataaaacgaattgtagattaaccggatacataaatttatataaaatgtggtgcaatattatcaacataaa |
145 |
Q |
| |
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||||||| |||||||||||||||| | |||| | ||||||||||| ||||||||||||||| ||||||| |
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| T |
31431012 |
gataaaatgaattgtagattaaccaaagacatttacttatataaaatatggtgcaatattatccacataaa |
31431082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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