View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9778_low_22 (Length: 398)
Name: NF9778_low_22
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 6e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 172 - 380
Target Start/End: Original strand, 13462217 - 13462425
Alignment:
| Q |
172 |
atcattctccatgaaatcctcaatgggtccatggaggagcattgcgccacggtggatcttccaagatgtggtggagtcggtggtggaagacatagattca |
271 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13462217 |
atcattttccatgaaatcctcaatgggtccatggaggagcattgcgccatgatggatcttccaagatgtggtggagtcggtggtggaagacatagattca |
13462316 |
T |
|
| Q |
272 |
atgccatcaggaaggccaatttgtcgggaggggaattcgacggtgtgaaagcgaaggaaggagggagcggcggatgagagagattgggtaaggaattgga |
371 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| |
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| T |
13462317 |
atgccatcaggaaggccaacttgttgggaggggaattcgatggtgtgaaagcgaaggagggagggagcggcggatgagagagatttggtaagggattgga |
13462416 |
T |
|
| Q |
372 |
cgttggagg |
380 |
Q |
| |
|
||||||||| |
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|
| T |
13462417 |
cgttggagg |
13462425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 13440862 - 13441241
Alignment:
| Q |
1 |
atccgaatcagaatttgtatgagaatgaagtaaattgtttgttttgagggtctccattagggagacggcaaaaaggcacattccgttaaatgtgatgtta |
100 |
Q |
| |
|
|||| |||||||||| |||| |||||||||||| ||||||| || ||||| |||| || ||||||| |||||| ||| ||| || ||||||| ||| |
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| T |
13440862 |
atccaaatcagaattagtatcagaatgaagtaagttgtttgcttggagggattccacgagagagacggtaaaaagtgacaatccattgaatgtgaggttt |
13440961 |
T |
|
| Q |
101 |
ggaatctgaaacttatgggccaagtcattaatccatgggtatgcagcgtcggagatgatacaatctggcggatcattctccatgaaatcctcaatgggtc |
200 |
Q |
| |
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|| ||||||| |||||| |||||||||||| |||||||||||| | ||||||||||||||||||||| ||||| |||||||||||||||||||||| || |
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| T |
13440962 |
gggatctgaagcttatgcgccaagtcattagcccatgggtatgcggagtcggagatgatacaatctggtggatctttctccatgaaatcctcaatggatc |
13441061 |
T |
|
| Q |
201 |
catggaggagcattgcgccacggtggatcttccaagatgtggtggagtcggtggtggaagacatagattcaatgccatcaggaaggccaatttgtcggga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||||||||||||||| ||||| ||| | | |||| |||| |
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| T |
13441062 |
catggaggagcattgcgccacggtggatcttccaagaggtcatagagtcagtggtggaagacatagattcaatgccttcagggaggtcgacttgttggga |
13441161 |
T |
|
| Q |
301 |
ggggaattcgacggtgtgaaagcgaaggaaggagggagcggcggatgagagagattgggtaaggaattggacgttggagg |
380 |
Q |
| |
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||| || ||||||||||| ||||| |||||| ||| ||| |||||||||||||||| ||| ||| |||| ||||||||| |
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| T |
13441162 |
gggaaagtcgacggtgtggaagcggaggaagaaggaagccgcggatgagagagatttggttagggattgagcgttggagg |
13441241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 13455496 - 13455672
Alignment:
| Q |
1 |
atccgaatcagaatttgtatgagaatgaagtaaattgtttgttttgagggtctccattagggagacggcaaaaaggcacattccgttaaatgtgatgtta |
100 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13455496 |
atccgaatcaaaatttgtatcagaatgaagtaaattgtttgttttgagggtctccattagggagacggcaaaaaggcacattccgttaaatgtgatgtta |
13455595 |
T |
|
| Q |
101 |
ggaatctgaaacttatgggccaagtcattaatccatgggtatgcagcgtcggagatgatacaatctggcggatcatt |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
13455596 |
ggaatctgaaacttatgggccaagtcattaacccatgggtatgcagcgtcggagatgatacaatctgggggatcatt |
13455672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 13449025 - 13449388
Alignment:
| Q |
1 |
atccgaatcagaatttgtatgagaatgaagtaaattgtttgttttgagggtctccattagggagacggcaaaaaggcacattccgttaaatgtgatgtta |
100 |
Q |
| |
|
|||||||||||||| ||| ||||| | |||||||||||||||||||||||| |||| |||||||| ||||||||||||| ||| || ||||||||||| |
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|
| T |
13449025 |
atccgaatcagaatctgtctgagacttaagtaaattgtttgttttgagggtttccacgagggagacagcaaaaaggcacaatccattgaatgtgatgttt |
13449124 |
T |
|
| Q |
101 |
ggaatctgaaacttatgggccaagtcattaatccatgggtatgcagcgtcggagatgatacaatctggcggatcattctccatgaaatcctcaatgggtc |
200 |
Q |
| |
|
|| ||||||||||||| |||||||||||||| ||||||||| | | |||||||||||||||||| || ||||||||||| ||||||||| |||| ||| |
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|
| T |
13449125 |
gggatctgaaacttatcggccaagtcattaacccatgggtacgtggagtcggagatgatacaatccggtggatcattctcaatgaaatccccaataggtt |
13449224 |
T |
|
| Q |
201 |
catggaggagcattgcgccacggtggatcttccaagatgtggtggagtcggtggtggaagacatagattcaatgccatcaggaaggccaatttgtcggga |
300 |
Q |
| |
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| | |||||||| |||||| ||||||||||||| ||||||| ||| || || ||||||||||||||||| || ||||| ||||| | |||| |||| |
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|
| T |
13449225 |
ctttaaggagcatcgcgccagtatggatcttccaagtggtggtggggtccgtagttgaagacatagattcaataccttcagggaggccgacttgttggga |
13449324 |
T |
|
| Q |
301 |
ggggaattcgacggtgtgaaagcgaaggaaggagggagcggcggatgagagagattgggtaagg |
364 |
Q |
| |
|
|||||| || |||||||||| |||||||| || |||||| ||||||||||||||| ||||||| |
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|
| T |
13449325 |
ggggaagtcaacggtgtgaagacgaaggaatgaaggagcgtcggatgagagagatttggtaagg |
13449388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 98 - 342
Target Start/End: Complemental strand, 3416956 - 3416712
Alignment:
| Q |
98 |
ttaggaatctgaaacttatgggccaagtcattaatccatgggtatgcagcgtcggagatgatacaatctggcggatcattctccatgaaatcctcaatgg |
197 |
Q |
| |
|
||||| || |||| ||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||| || | |||||||||||||||| |
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|
| T |
3416956 |
ttagggatttgaagcttctgggccaagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgtttttaatgaaatcctcaatgg |
3416857 |
T |
|
| Q |
198 |
gtccatggaggagcattgcgccacggtggatcttccaagatgtggtggagtcggtggtggaagacatagattcaatgccatcaggaaggccaatttgtcg |
297 |
Q |
| |
|
||| ||||||||||||||||||| || ||||||||||| ||| | |||||||||||| || |||||||||||||| ||||| ||| | |||||| | |
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|
| T |
3416856 |
gtcgatggaggagcattgcgccattgttgatcttccaagtggtgacgaggtcggtggtggaggatatagattcaatgccttcagggaggtccatttgttg |
3416757 |
T |
|
| Q |
298 |
ggaggggaattcgacggtgtgaaagcgaaggaaggagggagcggc |
342 |
Q |
| |
|
|||| || ||||||||||||| ||| |||||| |||||||||| |
|
|
| T |
3416756 |
aaagggaaagtcgacggtgtgaaggcggaggaagaagggagcggc |
3416712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 119 - 320
Target Start/End: Original strand, 12541465 - 12541666
Alignment:
| Q |
119 |
gccaagtcattaatccatgggtatgcagcgtcggagatgatacaatctggcggatcattctccatgaaatcctcaatgggtccatggaggagcattgcgc |
218 |
Q |
| |
|
|||||||||||| ||||| ||| | || ||||| ||||||||||| || |||| |||| | | ||||| |||||||||||||||||||||||||| | |
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|
| T |
12541465 |
gccaagtcattaccccatgagtaagaagagtcggcaatgatacaatcaggtggattattcacaacaaaatcatcaatgggtccatggaggagcattgcac |
12541564 |
T |
|
| Q |
219 |
cacggtggatcttccaagatgtggtggagtcggtggtggaagacatagattcaatgccatcaggaaggccaatttgtcgggaggggaattcgacggtgtg |
318 |
Q |
| |
|
|| ||| || |||||||| || ||| ||| |||||||| ||||||||||||||||| | ||| ||| | | |||| ||||||||| ||||| ||||| |
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|
| T |
12541565 |
cattgtgaattttccaagaggtaatggggtcagtggtggaggacatagattcaatgcctttagggaggtcgacttgttcggaggggaagtcgacagtgtg |
12541664 |
T |
|
| Q |
319 |
aa |
320 |
Q |
| |
|
|| |
|
|
| T |
12541665 |
aa |
12541666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 48963047 - 48963162
Alignment:
| Q |
104 |
atctgaaacttatgggccaagtcattaatccatgggtatgcagcgtcggagatgatacaatctggcggatcattctccatgaaatcctcaatgggtccat |
203 |
Q |
| |
|
||||||| |||||| ||||||||| || |||||||||| | ||||| |||||| || || || ||||| |||||||||||||||| ||| ||||| | |
|
|
| T |
48963047 |
atctgaagcttatgacccaagtcataaacccatgggtatatacagtcggtgatgatgcagtcaggtggatccttctccatgaaatcctgaattggtccgt |
48963146 |
T |
|
| Q |
204 |
ggaggagcattgcgcc |
219 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
48963147 |
ggaggagcattgcgcc |
48963162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 48959049 - 48959105
Alignment:
| Q |
247 |
gtcggtggtggaagacatagattcaatgccatcaggaaggccaatttgtcgggaggg |
303 |
Q |
| |
|
||||| |||||| ||||||||||||| ||| ||||| ||||||| |||| ||||||| |
|
|
| T |
48959049 |
gtcggaggtggaggacatagattcaacgccgtcagggaggccaacttgttgggaggg |
48959105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 380
Target Start/End: Complemental strand, 12640754 - 12640625
Alignment:
| Q |
251 |
gtggtggaagacatagattcaatgccatcaggaaggccaatttgtcgggaggggaattcgacggtgtgaaagcgaaggaaggagggagcggcggatgaga |
350 |
Q |
| |
|
|||||||| |||| ||||||| ||| || ||||| | | |||| |||||||||| ||||||||||||| ||| ||||| | ||| || || | |||| |
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|
| T |
12640754 |
gtggtggaggacaatgattcaacgccgtcgggaagatcgacttgttgggaggggaagtcgacggtgtgaaggcggaggaaaaacggatcgacgaaggaga |
12640655 |
T |
|
| Q |
351 |
gagattgggtaaggaattggacgttggagg |
380 |
Q |
| |
|
|||||| ||||| ||| ||| ||||||||| |
|
|
| T |
12640654 |
gagatttggtaaagaaatgggcgttggagg |
12640625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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