View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_24 (Length: 395)
Name: NF9778_low_24
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 10 - 385
Target Start/End: Original strand, 10506772 - 10507147
Alignment:
| Q |
10 |
gaagcatagggcgagacaagcggcggagactaatcttttgaggatgaaaaaggaggctattcaagctttgcctgggggtttgaaggaagctgctttggtg |
109 |
Q |
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| T |
10506772 |
gaagcatagggcgagacaagcggcggagactaatcttttgatgatgaaaaaggaggctattgaagctttgcctgggggtttgaaggaagctgctttggtg |
10506871 |
T |
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| Q |
110 |
ccggatttgactccatttccggtgaataggtttatggcgacgcttacaccgcctattgatgggtatattgagaagattaaggaggctgctgataggatca |
209 |
Q |
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| T |
10506872 |
ccggatttgactccatttccggtgaataggtttatggcgacgcttacaccgcctattgatgggtatattgagaagattaaggaggctgctgataggatca |
10506971 |
T |
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| Q |
210 |
gtgggaaggagaagattaggtagattggtagtgttgattttgatggttcgtcacaggttagtattgattttgtttgtattgaatcctgcaaataagatgg |
309 |
Q |
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| T |
10506972 |
gtgggaaggagaagattaggtagattggtagtgttgattttgatggttcgtcacaggttagtattgattttgtttgtattgaatcctgcaaataagatgg |
10507071 |
T |
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| Q |
310 |
agtcaaactgtctttaattgatgaaatatcattgaatatgtttgcttatatcattggagttttcgtaacacctatg |
385 |
Q |
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| T |
10507072 |
agtgaaactgtctttaattgatgaaatatcattggatatgtttgcttatatcattggagttttcgtaacacctatg |
10507147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 294
Target Start/End: Complemental strand, 8755764 - 8755480
Alignment:
| Q |
10 |
gaagcatagggcgagacaagcggcggagactaatcttttgaggatgaaaaaggaggctattcaagctttgcctgggggtttgaaggaagctgctttggtg |
109 |
Q |
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| T |
8755764 |
gaagcatagggcgagacaagcggcagagacaaatcttttgaggatgaaaaagaaggctattgaagctttgcctgggggtttgaaggaaactgctttggtg |
8755665 |
T |
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| Q |
110 |
ccggatttgactccatttccggtgaataggtttatggcgacgcttacaccgcctattgatgggtatattgagaagattaaggaggctgctgataggatca |
209 |
Q |
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| T |
8755664 |
ccggatttgacgccgtttccgatgaatatgtttatggcaacgcttacgccgcctattgatgggtatattgaggagattaaggaggctgctgataggatca |
8755565 |
T |
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| Q |
210 |
gtgggaaggagaagattaggtagattggtagtgttgattttgatggttcgtcacaggttagtattgattttgtttgtattgaatc |
294 |
Q |
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| T |
8755564 |
gtgggaaggagaagattaggtagattggtagtgttgattttcagggtccgtcacaggttagtgttgattttgtttgtattgaatc |
8755480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 211 - 293
Target Start/End: Original strand, 10509890 - 10509972
Alignment:
| Q |
211 |
tgggaaggagaagattaggtagattggtagtgttgattttgatggttcgtcacaggttagtattgattttgtttgtattgaat |
293 |
Q |
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| T |
10509890 |
tgggaaggagaagattaggtagattggtagtgttgattttgagggtttgtcacaggttagtgttgattttgtttgtattgaat |
10509972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 279 - 362
Target Start/End: Complemental strand, 8755454 - 8755373
Alignment:
| Q |
279 |
ttgtttgtattgaatcctgcaaataagatggagtcaaactgtctttaattgatgaaatatcattgaatatgtttgcttatatca |
362 |
Q |
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| T |
8755454 |
ttgtttgtattgaatcttggaaataacatggagtgaaactg--tttaatcgatgaaatttcattggatatgtttgtttatatca |
8755373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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