View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9778_low_25 (Length: 387)

Name: NF9778_low_25
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9778_low_25
NF9778_low_25
[»] chr6 (45 HSPs)
chr6 (47-254)||(27681934-27682141)
chr6 (100-254)||(26805499-26805653)
chr6 (100-254)||(27608139-27608296)
chr6 (125-258)||(27590183-27590316)
chr6 (100-254)||(27715529-27715683)
chr6 (100-257)||(27695599-27695759)
chr6 (100-258)||(27674587-27674745)
chr6 (113-257)||(25491191-25491335)
chr6 (134-257)||(26887766-26887889)
chr6 (113-239)||(26952597-26952723)
chr6 (100-255)||(26851504-26851659)
chr6 (125-211)||(26826901-26826987)
chr6 (125-192)||(28789405-28789472)
chr6 (125-255)||(25547950-25548080)
chr6 (125-257)||(31287558-31287693)
chr6 (125-189)||(25486406-25486470)
chr6 (125-189)||(25513911-25513975)
chr6 (125-189)||(26058955-26059019)
chr6 (125-189)||(26078925-26078989)
chr6 (113-257)||(26962072-26962216)
chr6 (126-257)||(26876534-26876665)
chr6 (104-254)||(27074220-27074370)
chr6 (125-257)||(26638378-26638513)
chr6 (125-257)||(26744344-26744479)
chr6 (125-189)||(25582743-25582807)
chr6 (100-192)||(26659014-26659106)
chr6 (100-192)||(26764985-26765077)
chr6 (125-192)||(28795429-28795496)
chr6 (113-202)||(26061595-26061682)
chr6 (113-202)||(26081565-26081652)
chr6 (113-213)||(25077031-25077131)
chr6 (137-192)||(28246419-28246474)
chr6 (125-202)||(26626158-26626238)
chr6 (125-202)||(26732135-26732215)
chr6 (113-213)||(26649490-26649593)
chr6 (113-213)||(26755458-26755561)
chr6 (125-178)||(27528710-27528763)
chr6 (139-192)||(28142689-28142742)
chr6 (125-189)||(26146036-26146100)
chr6 (150-257)||(26808437-26808544)
chr6 (125-202)||(27657794-27657872)
chr6 (113-202)||(27662414-27662506)
chr6 (139-192)||(2170645-2170698)
chr6 (340-373)||(26805380-26805413)
chr6 (340-373)||(27695842-27695875)
[»] scaffold0349 (1 HSPs)
scaffold0349 (100-254)||(16262-16416)
[»] chr1 (4 HSPs)
chr1 (100-257)||(265354-265511)
chr1 (120-177)||(28129711-28129768)
chr1 (120-192)||(26139027-26139099)
chr1 (120-155)||(28124680-28124715)
[»] chr8 (1 HSPs)
chr8 (100-200)||(29270865-29270965)
[»] chr2 (1 HSPs)
chr2 (117-192)||(17990182-17990257)
[»] chr4 (7 HSPs)
chr4 (100-257)||(18696479-18696636)
chr4 (100-257)||(18652548-18652711)
chr4 (100-257)||(18676630-18676793)
chr4 (100-192)||(18686673-18686765)
chr4 (100-192)||(18721144-18721236)
chr4 (100-192)||(18728569-18728661)
chr4 (197-257)||(18686782-18686842)
[»] scaffold0419 (1 HSPs)
scaffold0419 (125-192)||(10555-10622)
[»] scaffold0277 (2 HSPs)
scaffold0277 (125-192)||(1761-1828)
scaffold0277 (125-192)||(10727-10794)
[»] scaffold0038 (1 HSPs)
scaffold0038 (137-192)||(46581-46636)
[»] scaffold0286 (1 HSPs)
scaffold0286 (139-192)||(12563-12616)


Alignment Details
Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 45)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 47 - 254
Target Start/End: Complemental strand, 27682141 - 27681934
Alignment:
Q  47 atttcgtatccattcacacaaaaattgacccttgtgcaataactatagccatacggaagaataaatatacaagttattgaagggatttctttacgaaacc 146  Q
    ||||| |||||||||||| ||| |||||| ||||||  |||   || ||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  27682141 atttcatatccattcacaaaaacattgacacttgtggcatactcattgcctttcggaagaataaatatacaagttattgaagggatttctttacgaaacc 27682042  T
Q  147 agaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattccctctcttctgtttgggaaataaaaataggtccatcgagcctcatgtag 246  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||  | ||| ||||  |||||||||||    
T  27682041 agaaagaaattatgggtcccctgctttggtgctcaaaccaatctggtatcccctctcttccatttgggaaataaatcttggtgcatcccgcctcatgtag 27681942  T
Q  247 ttgctgtt 254  Q
    || |||||    
T  27681941 tttctgtt 27681934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 100 - 254
Target Start/End: Complemental strand, 26805653 - 26805499
Alignment:
Q  100 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattccc 199  Q
    |||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  26805653 cggaagaataaaaatacatgttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccttgctttggtgctcaaaccaatctggtatcccc 26805554  T
Q  200 tctcttctgtttgggaaataaaaataggtccatcgagcctcatgtagttgctgtt 254  Q
    ||| ||| ||||||||||  ||||||||||||| |||||||||||||||||||||    
T  26805553 tctgttccgtttgggaaaacaaaataggtccattgagcctcatgtagttgctgtt 26805499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 100 - 254
Target Start/End: Original strand, 27608139 - 27608296
Alignment:
Q  100 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattcc- 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||     
T  27608139 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaagtgtgagtcccctgctttggtgctcaaaccaatctggtatcccc 27608238  T
Q  199 --ctctcttctgtttgggaaataaaaataggtccatcgagcctcatgtagttgctgtt 254  Q
      |||| ||| ||||||||| | ||||||||| |||| |||||||||||||| |||||    
T  27608239 tgctctgttccgtttgggaattcaaaataggtgcatccagcctcatgtagtttctgtt 27608296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 125 - 258
Target Start/End: Original strand, 27590183 - 27590316
Alignment:
Q  125 gaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattccctctcttctgtttgggaaataaaaat 224  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||    
T  27590183 gaagggatttctttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatcccctctgttccgtttgggaaataaaaat 27590282  T
Q  225 aggtccatcgagcctcatgtagttgctgttagtg 258  Q
    | || ||||||||||||||||||| |||||||||    
T  27590283 aagtgcatcgagcctcatgtagttcctgttagtg 27590316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 100 - 254
Target Start/End: Original strand, 27715529 - 27715683
Alignment:
Q  100 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattccc 199  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  27715529 cggaaaaataattatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatccca 27715628  T
Q  200 tctcttctgtttgggaaataaaaataggtccatcgagcctcatgtagttgctgtt 254  Q
    ||| ||| ||||||||| | || |||||| |||| ||||| |||||||| |||||    
T  27715629 tctgttccgtttgggaatttaatataggtgcatccagcctgatgtagtttctgtt 27715683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 100 - 257
Target Start/End: Original strand, 27695599 - 27695759
Alignment:
Q  100 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattcc- 198  Q
    |||||||||||| ||||||| ||| ||||||||||||||| ||||||| ||||||||||||  ||||||||||||||||||||||||||||||||| ||     
T  27695599 cggaagaataaaaatacaagatatagaagggatttctttatgaaaccaaaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatcccc 27695698  T
Q  199 --ctctcttctgtttgggaaataaaaataggtccatcgagcctcatgtagttgctgttagt 257  Q
      |||| ||| ||||||||||| ||||   || ||||||||||||||||||||||||||||    
T  27695699 agctctgttccgtttgggaaatcaaaacgagtgcatcgagcctcatgtagttgctgttagt 27695759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 100 - 258
Target Start/End: Original strand, 27674587 - 27674745
Alignment:
Q  100 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattccc 199  Q
    |||| ||||| | ||| |||| || ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||    
T  27674587 cggaggaatacaaatataagtcatagaagggatttctttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatcccc 27674686  T
Q  200 tctcttctgtttgggaaataaaaataggtccatcgagcctcatgtagttgctgttagtg 258  Q
    ||| ||  ||||||||||  ||||   || ||||||||||||||||||| |||||||||    
T  27674687 tctttttcgtttgggaaaagaaaacgagtgcatcgagcctcatgtagttcctgttagtg 27674745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 113 - 257
Target Start/End: Original strand, 25491191 - 25491335
Alignment:
Q  113 atacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattccctctcttctgtttg 212  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||  |||||||  |||||||||| ||||||||||| |||||||| ||| ||||||    
T  25491191 atacaacttattgaagggatttctttacaaaaccagaaagaaattgtccgtcccctaatttggtgctcgaaccaatctggaattccctcacttgtgtttg 25491290  T
Q  213 ggaaataaaaataggtccatcgagcctcatgtagttgctgttagt 257  Q
    | ||| |||  | ||| |||| |||||| ||||||||||||||||    
T  25491291 gcaaacaaatctcggtgcatccagcctcgtgtagttgctgttagt 25491335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 134 - 257
Target Start/End: Complemental strand, 26887889 - 26887766
Alignment:
Q  134 tctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattccctctcttctgtttgggaaataaaaataggtccatc 233  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| || |||||||||| ||||||||||  ||| |  || ||||    
T  26887889 tctttacgaaaccagaaagaaagtgtgtgtcccctgctttggtgctcaaaccaatctggaatcccctctcttccgtttgggaaaagaaactctgtgcatc 26887790  T
Q  234 gagcctcatgtagttgctgttagt 257  Q
     |||||||| ||||| ||||||||    
T  26887789 cagcctcatatagtttctgttagt 26887766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 113 - 239
Target Start/End: Complemental strand, 26952723 - 26952597
Alignment:
Q  113 atacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattccctctcttctgtttg 212  Q
    ||||||||||| |||||||| | | |||||||||||||||||||||||  ||||||| |||||||||||||||||||||| || |||||| || ||||||    
T  26952723 atacaagttatagaagggatctttctacgaaaccagaaagaaattgtgtctcccctggtttggtgctcaaaccaatctggaatcccctctgttttgtttg 26952624  T
Q  213 ggaaataaaaataggtccatcgagcct 239  Q
    |||||| || |||||| |||| |||||    
T  26952623 ggaaatgaatataggtgcatccagcct 26952597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 100 - 255
Target Start/End: Complemental strand, 26851659 - 26851504
Alignment:
Q  100 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattccc 199  Q
    ||||| |||||  ||||| ||||| |||||||| | ||||||||||||||| |||||||||  | |||||||||||||||| ||||||||||| || ||     
T  26851659 cggaacaataataatacatgttatagaagggatctttttacgaaaccagaaggaaattgtgttttccctgctttggtgctcgaaccaatctggaatccct 26851560  T
Q  200 tctcttctgtttgggaaataaaaataggtccatcgagcctcatgtagttgctgtta 255  Q
    ||| ||| | |||| |||  || || ||| |||| ||| |||||||||||||||||    
T  26851559 tctgttccgcttggcaaaataatattggtacatccagcgtcatgtagttgctgtta 26851504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 26826987 - 26826901
Alignment:
Q  125 gaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattccctctcttctgttt 211  Q
    |||||||||| |||||||||||||||||||||||||  ||| ||||||||||||||||||| |||||| || ||||| ||| |||||    
T  26826987 gaagggatttttttacgaaaccagaaagaaattgtgtctcctctgctttggtgctcaaaccgatctggaatcccctcacttttgttt 26826901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 28789472 - 28789405
Alignment:
Q  125 gaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 192  Q
    |||||||| | |||||||||||||||||||||||||  |||||||||||||||||| |||||||||||    
T  28789472 gaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctgg 28789405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 125 - 255
Target Start/End: Complemental strand, 25548080 - 25547950
Alignment:
Q  125 gaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattccctctcttctgtttgggaaataaaaat 224  Q
    ||||||| |||||||  ||||||||||||||||||   ||||||||||||||||||||||||||| || || |  ||| || |||||||||| | |||||    
T  25548080 gaagggagttctttatcaaaccagaaagaaattgtctctcccctgctttggtgctcaaaccaatcaggaatcctttctgttgtgtttgggaattgaaaat 25547981  T
Q  225 aggtccatcgagcctcatgtagttgctgtta 255  Q
     ||| |||| ||  |||||||||| ||||||    
T  25547980 gggtgcatccagattcatgtagtttctgtta 25547950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 125 - 257
Target Start/End: Complemental strand, 31287693 - 31287558
Alignment:
Q  125 gaagggatttctttacgaaaccagaaagaaattgtgg---gtcccctgctttggtgctcaaaccaatctggtattccctctcttctgtttgggaaataaa 221  Q
    |||||||| | ||||||||||||||||| |||||||    |||||||| |||||||||||||||||| ||| || || ||| |||  |||||||||||||    
T  31287693 gaagggatctttttacgaaaccagaaagtaattgtgctttgtcccctgatttggtgctcaaaccaatttggaatcccatctgttccatttgggaaataaa 31287594  T
Q  222 aataggtccatcgagcctcatgtagttgctgttagt 257  Q
    | |  || | || |||||||||||||| ||||||||    
T  31287593 attcagtgcctccagcctcatgtagtttctgttagt 31287558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 25486470 - 25486406
Alignment:
Q  125 gaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatc 189  Q
    ||||||| |||||||  |||||||||||||||||||  |||||||||||||||||||||||||||    
T  25486470 gaagggagttctttatcaaaccagaaagaaattgtgcctcccctgctttggtgctcaaaccaatc 25486406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 25513975 - 25513911
Alignment:
Q  125 gaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatc 189  Q
    ||||||||||||||| || ||||||||| |||||||  |||||||||||||||||||||||||||    
T  25513975 gaagggatttctttatgataccagaaagcaattgtgactcccctgctttggtgctcaaaccaatc 25513911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 26059019 - 26058955
Alignment:
Q  125 gaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatc 189  Q
    ||||||| |||||||  |||||||||||||||||||  |||||||||||||||||||||||||||    
T  26059019 gaagggagttctttatcaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatc 26058955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 26078989 - 26078925
Alignment:
Q  125 gaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatc 189  Q
    ||||||| |||||||  |||||||||||||||||||  |||||||||||||||||||||||||||    
T  26078989 gaagggagttctttatcaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatc 26078925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 257
Target Start/End: Complemental strand, 26962216 - 26962072
Alignment:
Q  113 atacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattccctctcttctgtttg 212  Q
    ||||| ||||| | |||||| | ||| ||| |||||||||||| ||||  |||| | ||||||||||||||||||||||| || ||||| |||| |||||    
T  26962216 atacatgttatagtagggatctttttgcgataccagaaagaaaatgtgtctccctttctttggtgctcaaaccaatctggaatcccctcacttccgtttg 26962117  T
Q  213 ggaaataaaaataggtccatcgagcctcatgtagttgctgttagt 257  Q
    |||||  ||  | ||| |||| |||||||||||| | ||||||||    
T  26962116 ggaaactaatcttggtgcatccagcctcatgtaggtcctgttagt 26962072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 257
Target Start/End: Complemental strand, 26876665 - 26876534
Alignment:
Q  126 aagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattccctctcttctgtttgggaaataaaaata 225  Q
    ||||||| | ||||||||||||||||||||||||  ||||| || ||||||| |  ||||| ||||| || |||||| ||| |||||||| |  || |||    
T  26876665 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccctctgttccgtttgggagaagaatata 26876566  T
Q  226 ggtccatcgagcctcatgtagttgctgttagt 257  Q
    ||| |||| |||||||||||||| ||| ||||    
T  26876565 ggtgcatccagcctcatgtagtttctggtagt 26876534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 254
Target Start/End: Complemental strand, 27074370 - 27074220
Alignment:
Q  104 agaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattccctctc 203  Q
    |||| ||| ||||| ||||| | |||||| ||||||| |||||| ||||||||||    |||| ||||| ||||||||||||||||||| ||  |||| |    
T  27074370 agaagaaaaatacatgttatagtagggatctctttactaaaccaaaaagaaattgcatttcccatgcttcggtgctcaaaccaatctggaatctcctcac 27074271  T
Q  204 ttctgtttgggaaataaaaataggtccatcgagcctcatgtagttgctgtt 254  Q
    |||| |||||||||  ||   |||| |||| |||||||||||||| |||||    
T  27074270 ttctatttgggaaactaatccaggtgcatccagcctcatgtagttcctgtt 27074220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 125 - 257
Target Start/End: Complemental strand, 26638513 - 26638378
Alignment:
Q  125 gaagggatttctttacgaaaccagaaagaaattgtg---ggtcccctgctttggtgctcaaaccaatctggtattccctctcttctgtttgggaaataaa 221  Q
    |||||||| | |||||||||||||||||||||||||    ||||||||||||| ||||| ||||||||||| ||  ||||| ||||| |||| |||  ||    
T  26638513 gaagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatctcctctgttctggttggaaaacgaa 26638414  T
Q  222 aataggtccatcgagcctcatgtagttgctgttagt 257  Q
     ||  || |||| ||| |||||||||| ||||||||    
T  26638413 tatcagtgcatccagcttcatgtagtttctgttagt 26638378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 125 - 257
Target Start/End: Complemental strand, 26744479 - 26744344
Alignment:
Q  125 gaagggatttctttacgaaaccagaaagaaattgtg---ggtcccctgctttggtgctcaaaccaatctggtattccctctcttctgtttgggaaataaa 221  Q
    |||||||| | |||||||||||||||||||||||||    ||||||||||||| ||||| ||||||||||| ||  ||||| ||||| |||| |||  ||    
T  26744479 gaagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatctcctctgttctggttggaaaacgaa 26744380  T
Q  222 aataggtccatcgagcctcatgtagttgctgttagt 257  Q
     ||  || |||| ||| |||||||||| ||||||||    
T  26744379 tatcagtgcatccagcttcatgtagtttctgttagt 26744344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 25582807 - 25582743
Alignment:
Q  125 gaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatc 189  Q
    ||||||| |||||||  ||||||||||||||||||   |||||||||||||||||||||||||||    
T  25582807 gaagggagttctttatcaaaccagaaagaaattgtctctcccctgctttggtgctcaaaccaatc 25582743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 100 - 192
Target Start/End: Complemental strand, 26659106 - 26659014
Alignment:
Q  100 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 192  Q
    |||||||| ||  |||||| | || |||||||| | |||||||||||||||||||| |||  |||||||| |||||||||| |||||||||||    
T  26659106 cggaagaagaagaatacaaataatagaagggatctttttacgaaaccagaaagaaactgtttgtcccctgatttggtgctcgaaccaatctgg 26659014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 100 - 192
Target Start/End: Complemental strand, 26765077 - 26764985
Alignment:
Q  100 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 192  Q
    |||||||| ||  |||||| | || |||||||| | |||||||||||||||||||| |||  |||||||| |||||||||| |||||||||||    
T  26765077 cggaagaagaagaatacaaataatagaagggatctttttacgaaaccagaaagaaactgtttgtcccctgatttggtgctcgaaccaatctgg 26764985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 28795496 - 28795429
Alignment:
Q  125 gaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 192  Q
    |||||||| | ||||| ||||||||| |||||||||  |||||||||||||||||| |||||||||||    
T  28795496 gaagggatctttttacaaaaccagaaggaaattgtgtctcccctgctttggtgctcgaaccaatctgg 28795429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 26061682 - 26061595
Alignment:
Q  113 atacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattccctct 202  Q
    |||| |||||| |||||||||| |||||||||||||||| |||||||  ||||| || |||||||||  ||||||||||| || ||||||    
T  26061682 atactagttatagaagggatttatttacgaaaccagaaaaaaattgt--gtcccgtgatttggtgctttaaccaatctggaatcccctct 26061595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 26081652 - 26081565
Alignment:
Q  113 atacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattccctct 202  Q
    |||| |||||| |||||||||| |||||||||||||||| |||||||  ||||| || |||||||||  ||||||||||| || ||||||    
T  26081652 atactagttatagaagggatttatttacgaaaccagaaaaaaattgt--gtcccgtgatttggtgctttaaccaatctggaatcccctct 26081565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 25077131 - 25077031
Alignment:
Q  113 atacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattccctctcttctgtttg 212  Q
    |||||||| || |||||||| | ||| |||||||||||||||||||||  ||||    |||||||||| ||||||||||| || |||||| ||||| |||    
T  25077131 atacaagtaatagaagggatctttttgcgaaaccagaaagaaattgtgtctccctccatttggtgctcgaaccaatctggaatcccctcttttctggttg 25077032  T
Q  213 g 213  Q
    |    
T  25077031 g 25077031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 28246474 - 28246419
Alignment:
Q  137 ttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 192  Q
    ||||||||||| |||||||||||  ||||| |||||||||| ||||||||||||||    
T  28246474 ttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctgg 28246419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 26626238 - 26626158
Alignment:
Q  125 gaagggatttctttacgaaaccagaaagaaattg---tgggtcccctgctttggtgctcaaaccaatctggtattccctct 202  Q
    |||||||| | |||||||||||||||||||||||   || |||||||| |||| ||||| ||||||||||| || ||||||    
T  26626238 gaagggatctttttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctggaatcccctct 26626158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 26732215 - 26732135
Alignment:
Q  125 gaagggatttctttacgaaaccagaaagaaattg---tgggtcccctgctttggtgctcaaaccaatctggtattccctct 202  Q
    |||||||| | |||||||||||||||||||||||   || |||||||| |||| ||||| ||||||||||| || ||||||    
T  26732215 gaagggatctttttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctggaatcccctct 26732135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 26649593 - 26649490
Alignment:
Q  113 atacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccct---gctttggtgctcaaaccaatctggtattccctctcttctgt 209  Q
    ||||| ||||| |||||||| | |||||||||||| ||||||||||||  ||||||   | ||||||| || ||||||||||| || |||||| ||| ||    
T  26649593 atacatgttatagaagggatatttttacgaaaccaaaaagaaattgtgtctcccctaacgatttggtgttcgaaccaatctggaatcccctctattccgt 26649494  T
Q  210 ttgg 213  Q
    ||||    
T  26649493 ttgg 26649490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 26755561 - 26755458
Alignment:
Q  113 atacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccct---gctttggtgctcaaaccaatctggtattccctctcttctgt 209  Q
    ||||| ||||| |||||||| | |||||||||||| ||||||||||||  ||||||   | ||||||| || ||||||||||| || |||||| ||| ||    
T  26755561 atacatgttatagaagggatatttttacgaaaccaaaaagaaattgtgtctcccctaacgatttggtgttcgaaccaatctggaatcccctctattccgt 26755462  T
Q  210 ttgg 213  Q
    ||||    
T  26755461 ttgg 26755458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 27528710 - 27528763
Alignment:
Q  125 gaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgc 178  Q
    |||||||| | ||||||||||||||||||||||||| ||||| |||||| ||||    
T  27528710 gaagggatctttttacgaaaccagaaagaaattgtgtgtcccttgcttttgtgc 27528763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 28142742 - 28142689
Alignment:
Q  139 acgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 192  Q
    |||||||||||||| |||||  |||||| ||||||||||||||||||| |||||    
T  28142742 acgaaaccagaaagtaattgatggtcccttgctttggtgctcaaaccactctgg 28142689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 26146100 - 26146036
Alignment:
Q  125 gaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatc 189  Q
    ||||||| || |||| || ||||||||| |||| ||  |||||||||||||||||||||||||||    
T  26146100 gaagggagttttttatgataccagaaagcaattttgcctcccctgctttggtgctcaaaccaatc 26146036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 150 - 257
Target Start/End: Complemental strand, 26808544 - 26808437
Alignment:
Q  150 aagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattccctctcttctgtttgggaaataaaaataggtccatcgagcctcatgtagttg 249  Q
    ||||||| ||| ||||| || |||||||||| ||||||||||| || |||||| |||| ||||| ||| ||| || |||  ||  |||||||||||| |     
T  26808544 aagaaatagtgcgtcccttgatttggtgctcgaaccaatctggaatcccctctgttctttttggcaaacaaatattggtggatacagcctcatgtaggtt 26808445  T
Q  250 ctgttagt 257  Q
    ||||||||    
T  26808444 ctgttagt 26808437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 27657794 - 27657872
Alignment:
Q  125 gaagggatttctttacgaaaccagaaagaaattgtgggt-cccctgctttggtgctcaaaccaatctggtattccctct 202  Q
    |||||||| | ||||||||||||||||||||||||   | |||||| ||||||||||  |||||||||| || ||||||    
T  27657794 gaagggatctttttacgaaaccagaaagaaattgtatctccccctgatttggtgctcgtaccaatctggaatcccctct 27657872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 27662414 - 27662506
Alignment:
Q  113 atacaagttattgaagggatttctttacgaaaccagaaagaaattg---tgggtcccctgctttggtgctcaaaccaatctggtattccctct 202  Q
    ||||||||||| |||||||| | |||||  ||||||||||||||||   || ||||||||  ||| ||||| ||||||||||| || ||||||    
T  27662414 atacaagttatagaagggatctttttacataaccagaaagaaattgagttgtgtcccctgacttgatgctcgaaccaatctggaatcccctct 27662506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 2170645 - 2170698
Alignment:
Q  139 acgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 192  Q
    ||||||||||||||||||||  |||||| ||||||| || |||||||| |||||    
T  2170645 acgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctgg 2170698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 373
Target Start/End: Complemental strand, 26805413 - 26805380
Alignment:
Q  340 gtgcaatagaaaacaacaacaaacctgactcatt 373  Q
    |||||||| |||||||||||||||||||||||||    
T  26805413 gtgcaataaaaaacaacaacaaacctgactcatt 26805380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 373
Target Start/End: Original strand, 27695842 - 27695875
Alignment:
Q  340 gtgcaatagaaaacaacaacaaacctgactcatt 373  Q
    |||||||| |||||||||||||||||||||||||    
T  27695842 gtgcaataaaaaacaacaacaaacctgactcatt 27695875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 100 - 254
Target Start/End: Complemental strand, 16416 - 16262
Alignment:
Q  100 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattccc 199  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  16416 cggaaaaataattatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatccca 16317  T
Q  200 tctcttctgtttgggaaataaaaataggtccatcgagcctcatgtagttgctgtt 254  Q
    ||| ||| ||||||||| | || |||||| |||| ||||| |||||||| |||||    
T  16316 tctgttccgtttgggaatttaatataggtgcatccagcctgatgtagtttctgtt 16262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 100 - 257
Target Start/End: Original strand, 265354 - 265511
Alignment:
Q  100 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattccc 199  Q
    |||||||||||  ||| |||| |  |||||||| | |||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||| |||    
T  265354 cggaagaataataataaaagtaacagaagggatctttttacgaaaccagaaagaaattgtgtttcccttgctttggtgctcaaaccaatctggtatcccc 265453  T
Q  200 tctcttctgtttgggaaataaaaataggtccatcgagcctcatgtagttgctgttagt 257  Q
    ||| ||| |||||||||||| ||||| || |||||||| |||||||||| ||||||||    
T  265454 tctgttccgtttgggaaatacaaataagtgcatcgagcttcatgtagtttctgttagt 265511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 28129711 - 28129768
Alignment:
Q  120 ttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtg 177  Q
    |||| |||||||||||||||||||||||||||||||  ||  |||||| |||||||||    
T  28129711 ttatagaagggatttctttacgaaaccagaaagaaacagtatgtccccagctttggtg 28129768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 26139099 - 26139027
Alignment:
Q  120 ttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 192  Q
    |||| |||||||||| ||||| ||||||||||||||||||  | |||| |  ||||||||| |||||||||||    
T  26139099 ttatagaagggatttttttacaaaaccagaaagaaattgtctgccccccggattggtgctcgaaccaatctgg 26139027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 155
Target Start/End: Original strand, 28124680 - 28124715
Alignment:
Q  120 ttattgaagggatttctttacgaaaccagaaagaaa 155  Q
    |||| |||||||||||||||||||||||||||||||    
T  28124680 ttatagaagggatttctttacgaaaccagaaagaaa 28124715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 100 - 200
Target Start/End: Original strand, 29270865 - 29270965
Alignment:
Q  100 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattccc 199  Q
    |||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||    
T  29270865 cggaagcataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgttcgaaccaatctggtatcccc 29270964  T
Q  200 t 200  Q
    |    
T  29270965 t 29270965  T

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Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 17990182 - 17990257
Alignment:
Q  117 aagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 192  Q
    ||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  17990182 aagttatagaagggatttctttacgaaaccagaaagaaattgtgtgccccctgctttggtgctcaaaccaatctgg 17990257  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 100 - 257
Target Start/End: Original strand, 18696479 - 18696636
Alignment:
Q  100 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattccc 199  Q
    |||||||||||  ||| || |||| |||||||| | |||||| ||||||||||||||||   | ||||||||||| ||||| ||||||||||| || |||    
T  18696479 cggaagaataataataaaatttatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcccc 18696578  T
Q  200 tctcttctgtttgggaaataaaaataggtccatcgagcctcatgtagttgctgttagt 257  Q
    ||| ||| |||||||||| |||| | ||| || | ||||||||||| |||||||||||    
T  18696579 tctgttccgtttgggaaagaaaatttggtgcacccagcctcatgtaattgctgttagt 18696636  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 257
Target Start/End: Original strand, 18652548 - 18652711
Alignment:
Q  100 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg------t 193  Q
    |||||||||||  ||| ||||||| |||||||| | |||||| ||||||||||||||||   | ||||||||||| ||||| |||||||||||           
T  18652548 cggaagaataataatagaagttatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatccta 18652647  T
Q  194 attccctctcttctgtttgggaaataaaaataggtccatcgagcctcatgtagttgctgttagt 257  Q
    || |||||| ||| |||||||||| ||| || ||| || | ||||||||||| |||||||||||    
T  18652648 atcccctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagt 18652711  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 257
Target Start/End: Original strand, 18676630 - 18676793
Alignment:
Q  100 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtattc-- 197  Q
    |||||||||||  ||| ||||||| |||||||| | |||||| ||||||||||||||||   | ||||||||||| ||||| ||||||||||| || |      
T  18676630 cggaagaataataatagaagttatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatccta 18676729  T
Q  198 ----cctctcttctgtttgggaaataaaaataggtccatcgagcctcatgtagttgctgttagt 257  Q
        ||||| ||| |||||||||| ||| || ||| || | ||||||||||| |||||||||||    
T  18676730 atctcctctgttccgtttgggaaacaaatattggtgcacccagcctcatgtaattgctgttagt 18676793  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 18686673 - 18686765
Alignment:
Q  100 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 192  Q
    ||||||||||| |||| ||||||| |||||||| | |||||  ||||||||||||||||   | ||||||||||| ||||| |||||||||||    
T  18686673 cggaagaataattatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctgg 18686765  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 18721144 - 18721236
Alignment:
Q  100 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 192  Q
    |||||||||||  ||| ||||||| |||||||| | |||||  ||||||||||||||||   | ||||||||||||||||| |||||||||||    
T  18721144 cggaagaataataataaaagttatagaagggatctttttacagaaccagaaagaaattgaatgacccctgctttggtgctcgaaccaatctgg 18721236  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 18728569 - 18728661
Alignment:
Q  100 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 192  Q
    |||||||||||  ||| ||||||| |||||||| | |||||  ||||||||||||||||   | ||||||||||| ||||| |||||||||||    
T  18728569 cggaagaataataataaaagttatagaagggatctttttacagaaccagaaagaaattgaatgacccctgctttgatgctcgaaccaatctgg 18728661  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 18686782 - 18686842
Alignment:
Q  197 ccctctcttctgtttgggaaataaaaataggtccatcgagcctcatgtagttgctgttagt 257  Q
    |||||| ||| |||||||||||||||  |||| || | ||||||||||| |||||||||||    
T  18686782 ccctctgttccgtttgggaaataaaatgaggtgcacccagcctcatgtaattgctgttagt 18686842  T

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Target: scaffold0419 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 10622 - 10555
Alignment:
Q  125 gaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 192  Q
    |||||||| | |||||||||||||||||||||||||  |||||||||||||||||| |||||||||||    
T  10622 gaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctgg 10555  T

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Target: scaffold0277 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 1761 - 1828
Alignment:
Q  125 gaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 192  Q
    |||||||| | |||||||||||||||||||||||||  |||||||||||||||||| |||||||||||    
T  1761 gaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctgg 1828  T

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Target: scaffold0277; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 10727 - 10794
Alignment:
Q  125 gaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 192  Q
    |||||||| | |||||||||||||||||||||||||  |||||||||||||||||| |||||||||||    
T  10727 gaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctgg 10794  T

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Target: scaffold0038 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 46636 - 46581
Alignment:
Q  137 ttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 192  Q
    ||||||||||| |||||||||||  ||||| |||||||||| ||||||||||||||    
T  46636 ttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctgg 46581  T

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Target: scaffold0286 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 12616 - 12563
Alignment:
Q  139 acgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctgg 192  Q
    ||||||||||||||||||||  |||||| ||||||| || |||||||| |||||    
T  12616 acgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctgg 12563  T

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