View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9778_low_27 (Length: 384)

Name: NF9778_low_27
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9778_low_27
NF9778_low_27
[»] chr1 (4 HSPs)
chr1 (1-218)||(29513921-29514153)
chr1 (292-370)||(29514258-29514336)
chr1 (85-218)||(43625718-43625850)
chr1 (323-359)||(43625995-43626031)
[»] chr3 (4 HSPs)
chr3 (95-251)||(207059-207209)
chr3 (1-44)||(201337-201380)
chr3 (328-366)||(202101-202139)
chr3 (1-44)||(207864-207907)
[»] chr4 (3 HSPs)
chr4 (320-366)||(44924819-44924865)
chr4 (328-366)||(6908846-6908884)
chr4 (1-44)||(6900736-6900779)
[»] chr7 (1 HSPs)
chr7 (1-41)||(24652620-24652660)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 6e-93; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 29513921 - 29514153
Alignment:
Q  1 ttcatcatgctagggttcttatcaggcagagacacatcaggtatgtatattgctttcatcctg--------gt--atctgatttttaatggtagagatcc 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||  |||||||||||||||||||||||||    
T  29513921 ttcatcatgctagggttcttatcaggcagagacacatcaggtatgtatattgctttcatcctgacattggtgttaatctgatttttaatggtagagatcc 29514020  T
Q  91 tctccattgttcaagtaatggagggctcctgtactatggttttgtctgtttaattaaaatac-----tcaaatgtcacagattttggaaatgtgtaattt 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||    
T  29514021 tctccattgttcaagtaatggagggctcctgtactatggttttgtctgtttaattaaaatactcaagtcaaatgtcacagattttggaaatgtgtaattt 29514120  T
Q  186 tatatcatttttacacctaaaactataattgtt 218  Q
    |||||||||||||||||||||||||||||||||    
T  29514121 tatatcatttttacacctaaaactataattgtt 29514153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 292 - 370
Target Start/End: Original strand, 29514258 - 29514336
Alignment:
Q  292 taatgttttttatttatttaactggtcataatgaaatatgtttgggaatggatgataatgtcatttttggtttcacagg 370  Q
    |||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29514258 taattttttttatttatttatctagtcataatgaaatatgtttgggaatggatgataatgtcatttttggtttcacagg 29514336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 85 - 218
Target Start/End: Original strand, 43625718 - 43625850
Alignment:
Q  85 agatcctctccattgttcaagtaatggagggctcctgtactatggttttgtctgtttaattaaaatactcaaatgtcacagattttggaaatgtgtaatt 184  Q
    ||||| ||| ||||||||||| |||||||| || ||| ||||| ||||| |||| |||||||||||||| ||||||||   ||||||  ||||||| |||    
T  43625718 agatcatctgcattgttcaagaaatggaggtcttctgaactattgtttt-tctgattaattaaaatactgaaatgtcattaattttgagaatgtgtcatt 43625816  T
Q  185 ttatatcatttttacacctaaaactataattgtt 218  Q
    ||||||||||||||||||||||||| || |||||    
T  43625817 ttatatcatttttacacctaaaactgtacttgtt 43625850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 43625995 - 43626031
Alignment:
Q  323 tgaaatatgtttgggaatggatgataatgtcattttt 359  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  43625995 tgaaatacgtttggggatggatgataatgtcattttt 43626031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 8e-43; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 95 - 251
Target Start/End: Complemental strand, 207209 - 207059
Alignment:
Q  95 cattgttcaagtaatggagggctcctgtactatggttttgtctgtttaattaaaatactcaaatgtcacagattttggaaatgtgtaattttatatcatt 194  Q
    ||||||||||||||||||||||||||  ||||||||||| |||| ||||||||||||||||||||||||  |||||  ||||||||||||||||||||||    
T  207209 cattgttcaagtaatggagggctcctcaactatggtttt-tctgattaattaaaatactcaaatgtcactaattttttaaatgtgtaattttatatcatt 207111  T
Q  195 tttacacctaaaactataattgtttgtgtgaatgaaatgaagagaaatgtagagaat 251  Q
    ||||||||||||||||     ||| |||||||||||||||||||||||  |||||||    
T  207110 tttacacctaaaacta-----gttggtgtgaatgaaatgaagagaaatagagagaat 207059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 201337 - 201380
Alignment:
Q  1 ttcatcatgctagggttcttatcaggcagagacacatcaggtat 44  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  201337 ttcatcatgctagggttcttatcaggcagaggcacatcaggtat 201380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 328 - 366
Target Start/End: Original strand, 202101 - 202139
Alignment:
Q  328 tatgtttgggaatggatgataatgtcatttttggtttca 366  Q
    |||||||||||||||||||||||||||||||||||||||    
T  202101 tatgtttgggaatggatgataatgtcatttttggtttca 202139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 207907 - 207864
Alignment:
Q  1 ttcatcatgctagggttcttatcaggcagagacacatcaggtat 44  Q
    |||| |||||||||||||| ||||||||||| ||||||||||||    
T  207907 ttcaccatgctagggttctaatcaggcagaggcacatcaggtat 207864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 44924865 - 44924819
Alignment:
Q  320 taatgaaatatgtttgggaatggatgataatgtcatttttggtttca 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44924865 taatgaaatatgtttgggaatggatgataatgtcatttttggtttca 44924819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 328 - 366
Target Start/End: Complemental strand, 6908884 - 6908846
Alignment:
Q  328 tatgtttgggaatggatgataatgtcatttttggtttca 366  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6908884 tatgtttgggaatggatgataatgtcatttttggtttca 6908846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6900736 - 6900779
Alignment:
Q  1 ttcatcatgctagggttcttatcaggcagagacacatcaggtat 44  Q
    ||||||| ||||||||||||||||| ||||| ||||||||||||    
T  6900736 ttcatcacgctagggttcttatcagacagaggcacatcaggtat 6900779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 24652620 - 24652660
Alignment:
Q  1 ttcatcatgctagggttcttatcaggcagagacacatcagg 41  Q
    ||||||||||||||||||| ||||||||||| |||||||||    
T  24652620 ttcatcatgctagggttctaatcaggcagaggcacatcagg 24652660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University