View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_29 (Length: 381)
Name: NF9778_low_29
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 15250438 - 15250076
Alignment:
| Q |
1 |
tgagtttagtgttgttttaactttttagtgcatcatgctaacagtaaataa----tattaactatcatcactttgaaacaaaatagaacccatgatacat |
96 |
Q |
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| T |
15250438 |
tgagtttagcgttgttttaactttttagtgcatcatgctaacagtaaataaataatattaactatca---ctttgaaacaaaatagaacccatgacacat |
15250342 |
T |
|
| Q |
97 |
ttattaaattaaagtcattctgaccaatatcatctacaaccacatgtttcaaagaccacagaatccaccaggtcccccaaacaacacaacacgttgcaaa |
196 |
Q |
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| T |
15250341 |
ttattaaattaaagtaattctgaccaatatcatctacaaccacatgttttaaagaccacagaatccaccaggtccaccaaacaacacaacacgttgcaaa |
15250242 |
T |
|
| Q |
197 |
tcatcacgtaaattatcaacgtaatttgcatcataacaaagaggtttatcaaaatacacatgaacttcatcggcatgtggggcacgatcatttctttgac |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15250241 |
tcatcacgtaaattatcaacgtaatttgcatcataacaaagaggtttatcaaaatacacgtgaacttcatcggcatgtggggcacgatcatttctttgac |
15250142 |
T |
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| Q |
297 |
tatccttaatataaagatttgaaatataacatgaagttagaatatttgcaccagcaaactgtccag |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15250141 |
tatccttaatataaagatttgaaatataacatgaagttagaatatttgcaccagcaaactgtccag |
15250076 |
T |
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