View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9778_low_3 (Length: 606)

Name: NF9778_low_3
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9778_low_3
NF9778_low_3
[»] chr4 (55 HSPs)
chr4 (41-375)||(50250630-50250964)
chr4 (376-592)||(50251018-50251234)
chr4 (527-606)||(48891047-48891126)
chr4 (215-362)||(50668966-50669113)
chr4 (530-603)||(7771045-7771118)
chr4 (527-603)||(49041499-49041575)
chr4 (531-606)||(7904670-7904745)
chr4 (224-368)||(37827017-37827161)
chr4 (524-602)||(7774187-7774265)
chr4 (524-606)||(7877358-7877440)
chr4 (528-606)||(45372419-45372497)
chr4 (530-603)||(7789730-7789803)
chr4 (530-606)||(45366582-45366661)
chr4 (528-604)||(48862881-48862960)
chr4 (527-603)||(7238081-7238157)
chr4 (527-606)||(48170947-48171029)
chr4 (232-363)||(49044227-49044358)
chr4 (527-606)||(48156788-48156867)
chr4 (544-606)||(7822607-7822669)
chr4 (534-604)||(48870182-48870252)
chr4 (313-375)||(48875747-48875809)
chr4 (534-604)||(48885868-48885938)
chr4 (308-362)||(48891326-48891380)
chr4 (232-281)||(49048613-49048662)
chr4 (527-605)||(7907964-7908042)
chr4 (529-602)||(7765263-7765336)
chr4 (215-368)||(7877634-7877787)
chr4 (321-370)||(48870448-48870497)
chr4 (531-604)||(48875486-48875559)
chr4 (321-370)||(48886134-48886183)
chr4 (559-604)||(48902590-48902635)
chr4 (546-606)||(7813118-7813178)
chr4 (533-604)||(33134190-33134264)
chr4 (564-604)||(48735713-48735753)
chr4 (232-275)||(7237763-7237806)
chr4 (301-368)||(7237820-7237887)
chr4 (232-275)||(7771396-7771439)
chr4 (232-275)||(7790081-7790124)
chr4 (242-281)||(7813469-7813508)
chr4 (242-281)||(7822958-7822997)
chr4 (527-606)||(49044590-49044669)
chr4 (544-606)||(7800275-7800337)
chr4 (215-273)||(7908325-7908383)
chr4 (548-606)||(45385169-45385227)
chr4 (307-369)||(48705465-48705527)
chr4 (227-276)||(45384903-45384952)
chr4 (563-604)||(48148082-48148123)
chr4 (227-276)||(48735417-48735466)
chr4 (318-363)||(48852576-48852621)
chr4 (41-78)||(48852849-48852886)
chr4 (529-601)||(7786086-7786158)
chr4 (533-604)||(33133677-33133751)
chr4 (528-596)||(37827356-37827424)
chr4 (232-276)||(48147757-48147801)
chr4 (318-366)||(49048701-49048749)
[»] chr1 (6 HSPs)
chr1 (1-80)||(24415947-24416026)
chr1 (528-604)||(24309817-24309893)
chr1 (564-604)||(24322102-24322142)
chr1 (567-604)||(24415477-24415514)
chr1 (232-276)||(24367144-24367188)
chr1 (220-276)||(24369477-24369533)
[»] chr8 (7 HSPs)
chr8 (527-606)||(15348500-15348579)
chr8 (232-368)||(12200212-12200348)
chr8 (232-368)||(12444640-12444776)
chr8 (539-603)||(12199948-12200012)
chr8 (539-603)||(12444376-12444440)
chr8 (544-603)||(12194942-12195001)
chr8 (544-603)||(12439370-12439429)
[»] chr7 (1 HSPs)
chr7 (220-362)||(48883712-48883854)
[»] chr5 (8 HSPs)
chr5 (528-606)||(1812063-1812141)
chr5 (524-604)||(29695792-29695872)
chr5 (563-604)||(42562728-42562769)
chr5 (527-606)||(29687689-29687768)
chr5 (227-278)||(42562375-42562426)
chr5 (309-368)||(42562439-42562498)
chr5 (563-604)||(29712866-29712907)
chr5 (220-276)||(29696203-29696259)
[»] scaffold0508 (1 HSPs)
scaffold0508 (528-604)||(11902-11978)
[»] chr6 (6 HSPs)
chr6 (233-281)||(21015801-21015849)
chr6 (318-368)||(21015714-21015764)
chr6 (231-281)||(21979677-21979727)
chr6 (302-375)||(21979751-21979824)
chr6 (41-78)||(21015992-21016029)
chr6 (544-605)||(21980022-21980083)
[»] chr3 (8 HSPs)
chr3 (305-368)||(47452011-47452074)
chr3 (530-606)||(11024901-11024977)
chr3 (233-280)||(11005994-11006041)
chr3 (233-280)||(11024569-11024616)
chr3 (536-606)||(11006332-11006402)
chr3 (323-368)||(11006078-11006123)
chr3 (323-368)||(11015641-11015686)
chr3 (525-606)||(11015884-11015965)


Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 55)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 41 - 375
Target Start/End: Original strand, 50250630 - 50250964
Alignment:
Q  41 tcatgacggaaagctaaccaatgaatagccccattaaagagaacccctcgcttactacgaggatccaaagtggaattcatataagctaagtgggtaccct 140  Q
    |||| ||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  50250630 tcataacgaaaagccaaccaatgaatagccccattaaagagaacccctcgcttgctacgaggatccaaagtggaattcatataagctaagtgtgtaccct 50250729  T
Q  141 caatttcaatttgtttccagatattatttctcaatgnnnnnnnctccaaatgtgatgaatcattataatcataaggatgataggatattggaaccaccaa 240  Q
    ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  50250730 caatttcaatttgtttccagatattatttctcaatgaaaaaaactccaaatgtgatgaatcattataatcataaggatgataggatattgaaaccaccaa 50250829  T
Q  241 ataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaaaatgagacaaaggtatttgtatgtga 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50250830 ataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaaaatgagacaaaggtatttgtatgtga 50250929  T
Q  341 agcccagtggatggattccataggtagaggcttga 375  Q
    ||||| |||||||||||||||||||||||||||||    
T  50250930 agcccggtggatggattccataggtagaggcttga 50250964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 376 - 592
Target Start/End: Original strand, 50251018 - 50251234
Alignment:
Q  376 gaaaattatgagattggggaatcaaacaagacttagtaaggttcactaaagaagcataatagtgggacgattcaaaatctatagaataaacttcatgagg 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50251018 gaaaattatgagattggggaatcaaacaagacttagtaaggttcactaaagaagcataatagtgggacgattcaaaatctatagaataaacttcatgagg 50251117  T
Q  476 tgaatcttccattatggctagaattctaggaggagtttgtgcagtggaggtggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaa 575  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50251118 tgaatcttccattatggctagaattctaggaggagtttgtgcagtggaggtggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaa 50251217  T
Q  576 aaccaatacttacaaac 592  Q
    |||||| ||||| ||||    
T  50251218 aaccaagacttagaaac 50251234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 527 - 606
Target Start/End: Complemental strand, 48891126 - 48891047
Alignment:
Q  527 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacgta 606  Q
    |||||||||||||||| |||||||| | || ||||| |||| ||||||||||||| ||||||||||||||||||||||||    
T  48891126 ggtaagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgta 48891047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 215 - 362
Target Start/End: Complemental strand, 50669113 - 50668966
Alignment:
Q  215 ggatgataggatattggaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaa 314  Q
    |||| |||||| | || ||| ||||| ||||||||| ||||  |||||||||||||||||||||||||||   ||||||||| ||||| ||||| |||||    
T  50669113 ggatcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatcaaaatgatattcctttagtttggtatcaa 50669014  T
Q  315 aatgagacaaaggtatttgtatgtgaagcccagtggatggattccata 362  Q
    || ||||||| ||||| ||| | ||||  |  ||||||||||||||||    
T  50669013 aaggagacaatggtatctgtttatgaaatctggtggatggattccata 50668966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 530 - 603
Target Start/End: Complemental strand, 7771118 - 7771045
Alignment:
Q  530 aagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaac 603  Q
    ||||||||||||  ||||| || |||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  7771118 aagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaac 7771045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 527 - 603
Target Start/End: Original strand, 49041499 - 49041575
Alignment:
Q  527 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaac 603  Q
    |||||||| ||||||  |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  49041499 ggtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaac 49041575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 531 - 606
Target Start/End: Complemental strand, 7904745 - 7904670
Alignment:
Q  531 agttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacgta 606  Q
    |||||||||||  |||||||| |||| |||||||||||||||||||||||  |||||||||| |||||||||||||    
T  7904745 agttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgta 7904670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 368
Target Start/End: Original strand, 37827017 - 37827161
Alignment:
Q  224 gatattggaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaaaatgagaca 323  Q
    ||||||| ||| ||||| ||||||||| | || ||||||||||||||||||||||||  |  | ||| |||||  |  || ||||| | |||| ||||||    
T  37827017 gatattgaaacaaccaagtaatcatctctagactggtcataaccaaaaccatatagagaaccgaaataatattcttccaaattggagttaaaaggagaca 37827116  T
Q  324 aaggtatttgtatgtgaagcccagtggatggattccataggtaga 368  Q
    | ||||||||| ||||||  ||||||||||||||||||| |||||    
T  37827117 agggtatttgtttgtgaaatccagtggatggattccatatgtaga 37827161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 524 - 602
Target Start/End: Original strand, 7774187 - 7774265
Alignment:
Q  524 ggtggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaa 602  Q
    |||||| |||||||||||  |||||||| | ||||||||||||||||||||||||||   ||||||||| |||||||||    
T  7774187 ggtggtgagttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaa 7774265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 524 - 606
Target Start/End: Complemental strand, 7877440 - 7877358
Alignment:
Q  524 ggtggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacgta 606  Q
    |||||| |||||||||||  |||||||| | | ||||||||||||||||||||||||   |||||||| ||||||||||||||    
T  7877440 ggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgta 7877358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 528 - 606
Target Start/End: Original strand, 45372419 - 45372497
Alignment:
Q  528 gtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacgta 606  Q
    |||| |||||||||  |||||||| | || ||||||||||||| |||||||||| |||||||||| |||||||||||||    
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgta 45372497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 530 - 603
Target Start/End: Complemental strand, 7789803 - 7789730
Alignment:
Q  530 aagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaac 603  Q
    ||||||||||||  ||||| || |||| ||||| ||||||| |||||||||| |||||||||||||||||||||    
T  7789803 aagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaac 7789730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 530 - 606
Target Start/End: Original strand, 45366582 - 45366661
Alignment:
Q  530 aagttgaaaatgcaaatttgcacagtggggatca---gagataagagaaaaccaatacttacaaacgcatttgaaacgta 606  Q
    ||||||||||||  |||||||| |||| | ||||   |||||||||||||||||||||||||||||||| ||||||||||    
T  45366582 aagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcacttgaaacgta 45366661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 528 - 604
Target Start/End: Complemental strand, 48862960 - 48862881
Alignment:
Q  528 gtaagttgaaaatgcaaatttgcacagtggggatca---gagataagagaaaaccaatacttacaaacgcatttgaaacg 604  Q
    ||||||||||||||  |||||||| |||| ||||||   |||||||||||||||||| |||| |||||||||||||||||    
T  48862960 gtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttgaaacg 48862881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 527 - 603
Target Start/End: Original strand, 7238081 - 7238157
Alignment:
Q  527 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaac 603  Q
    |||| |||| |||||  |||||||| |||| || ||||||||||||||||||||| |||||||||| ||||||||||    
T  7238081 ggtatgttggaaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaac 7238157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 527 - 606
Target Start/End: Original strand, 48170947 - 48171029
Alignment:
Q  527 ggtaagttgaaaatgcaaatttgcacagtggggatca---gagataagagaaaaccaatacttacaaacgcatttgaaacgta 606  Q
    ||||| |||||||||| |||||||| |||| ||||||   |||||||||| ||||||| |||||||||| |||||||||||||    
T  48170947 ggtaatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacacatttgaaacgta 48171029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 232 - 363
Target Start/End: Original strand, 49044227 - 49044358
Alignment:
Q  232 aaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatatttctt-taatttggaatcaaaatgagacaaaggtat 330  Q
    ||||||||||||||||||||||||  | ||||| ||||||| |||||||||   |||||||| |  ||| ||| | |||| || || |||||||||||||    
T  49044227 aaccaccaaataatcatctgttgacggatcatacccaaaacaatatagatgtaaggaatgat-tgacttgtaaataggaaccataaggagacaaaggtat 49044325  T
Q  331 ttgtatgtgaagcccagtggatggattccatag 363  Q
    |||| ||||||  | ||||||||||||||||||    
T  49044326 ttgtttgtgaactctagtggatggattccatag 49044358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 527 - 606
Target Start/End: Original strand, 48156788 - 48156867
Alignment:
Q  527 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacgta 606  Q
    ||||| |||||||||  |||||||| | || | ||| |||||||||||||||||| ||||||||||||| ||||||||||    
T  48156788 ggtaatttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgta 48156867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 544 - 606
Target Start/End: Complemental strand, 7822669 - 7822607
Alignment:
Q  544 aatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacgta 606  Q
    |||||||| ||||||||||||||||||||||||||||  | |||||||| || ||||||||||    
T  7822669 aatttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaacgta 7822607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 534 - 604
Target Start/End: Complemental strand, 48870252 - 48870182
Alignment:
Q  534 tgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacg 604  Q
    ||||||||  |||||||| |  ||||||| ||||||||| |||||||| ||||||||||||||||||||||    
T  48870252 tgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacg 48870182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 313 - 375
Target Start/End: Complemental strand, 48875809 - 48875747
Alignment:
Q  313 aaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtagaggcttga 375  Q
    |||| |||||| |||||||||| ||||||  || |||||||||||||||||||||||||||||    
T  48875809 aaaaggagacataggtatttgtttgtgaaatccggtggatggattccataggtagaggcttga 48875747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 534 - 604
Target Start/End: Complemental strand, 48885938 - 48885868
Alignment:
Q  534 tgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacg 604  Q
    ||||||||  |||||||| |  ||||||| ||||||||| |||||||| ||||||||||||||||||||||    
T  48885938 tgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacg 48885868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 308 - 362
Target Start/End: Complemental strand, 48891380 - 48891326
Alignment:
Q  308 gaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccata 362  Q
    ||||||| | ||||||||||||||||| ||||||| |||||||||||||||||||    
T  48891380 gaatcaataggagacaaaggtatttgtttgtgaagtccagtggatggattccata 48891326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 49048613 - 49048662
Alignment:
Q  232 aaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagat 281  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  49048613 aaccaccaaataatcatctgttgatgggtcatacccaaaaccatatagat 49048662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 527 - 605
Target Start/End: Complemental strand, 7908042 - 7907964
Alignment:
Q  527 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacgt 605  Q
    |||||||||||||||  |||||||| | |||||| |||||||||||||||||||  |||||| |||  | |||||||||    
T  7908042 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgt 7907964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 529 - 602
Target Start/End: Complemental strand, 7765336 - 7765263
Alignment:
Q  529 taagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaa 602  Q
    ||||||| |||||  |||||||| |||| ||||||||||||| |||||||||  ||||||||| ||| ||||||    
T  7765336 taagttggaaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgcacttgaaa 7765263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 215 - 368
Target Start/End: Complemental strand, 7877787 - 7877634
Alignment:
Q  215 ggatgataggatattggaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaa 314  Q
    |||| |||||| | || ||||||||| ||||||||| |||| ||||||||||||||||||| || || | ||  |  ||||     ||||||||||  ||    
T  7877787 ggattataggacaatgaaaccaccaagtaatcatctcttgattggtcataaccaaaaccatgtatatcaatgcgacaatatgctgctaatttggaacgaa 7877688  T
Q  315 aatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtaga 368  Q
    || |||||| |||||||||| | | ||  ||||||||||||||||||| |||||    
T  7877687 aaggagacacaggtatttgttttttaaatccagtggatggattccatatgtaga 7877634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 321 - 370
Target Start/End: Complemental strand, 48870497 - 48870448
Alignment:
Q  321 acaaaggtatttgtatgtgaagcccagtggatggattccataggtagagg 370  Q
    |||||||||||||| ||||||  || ||||||||||||||||||||||||    
T  48870497 acaaaggtatttgtttgtgaaatccggtggatggattccataggtagagg 48870448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 531 - 604
Target Start/End: Complemental strand, 48875559 - 48875486
Alignment:
Q  531 agttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacg 604  Q
    |||||||||||  |||||| | | ||||| || ||||| |||||||||||| |||| |||||||||||||||||    
T  48875559 agttgaaaatgtgaatttgtaaaatggggttcggagatgagagaaaaccaagacttgcaaacgcatttgaaacg 48875486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 321 - 370
Target Start/End: Complemental strand, 48886183 - 48886134
Alignment:
Q  321 acaaaggtatttgtatgtgaagcccagtggatggattccataggtagagg 370  Q
    |||||||||||||| ||||||  || ||||||||||||||||||||||||    
T  48886183 acaaaggtatttgtttgtgaaatccggtggatggattccataggtagagg 48886134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 48902635 - 48902590
Alignment:
Q  559 gatcagagataagagaaaaccaatacttacaaacgcatttgaaacg 604  Q
    ||||||| ||||||||||||||| |||||||||| |||||||||||    
T  48902635 gatcagatataagagaaaaccaagacttacaaacacatttgaaacg 48902590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 546 - 606
Target Start/End: Complemental strand, 7813178 - 7813118
Alignment:
Q  546 tttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacgta 606  Q
    |||||| ||||||| ||||||||||||||||||||  | |||||||| || ||||||||||    
T  7813178 tttgcaaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaacgta 7813118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 533 - 604
Target Start/End: Original strand, 33134190 - 33134264
Alignment:
Q  533 ttgaaaatgcaaatttgcacagtggggatca---gagataagagaaaaccaatacttacaaacgcatttgaaacg 604  Q
    |||||||||  |||||||| |||| ||||||   |||||||||||||| |||  |||||||||||||||||||||    
T  33134190 ttgaaaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaaggcttacaaacgcatttgaaacg 33134264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 564 - 604
Target Start/End: Original strand, 48735713 - 48735753
Alignment:
Q  564 gagataagagaaaaccaatacttacaaacgcatttgaaacg 604  Q
    |||||||||||||||||| |||||||||| |||||||||||    
T  48735713 gagataagagaaaaccaagacttacaaacacatttgaaacg 48735753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 7237763 - 7237806
Alignment:
Q  232 aaccaccaaataatcatctgttgagtggtcataaccaaaaccat 275  Q
    ||||||||| ||||||||| |||| |||||||||||||||||||    
T  7237763 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7237806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 7237820 - 7237887
Alignment:
Q  301 taatttggaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtaga 368  Q
    |||||||||||||||| ||||||  ||||||||| | | ||  ||||||||||||||||||| |||||    
T  7237820 taatttggaatcaaaaggagacacgggtatttgttttttaaatccagtggatggattccatacgtaga 7237887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 7771439 - 7771396
Alignment:
Q  232 aaccaccaaataatcatctgttgagtggtcataaccaaaaccat 275  Q
    ||||||||| ||||||||| |||| |||||||||||||||||||    
T  7771439 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7771396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 7790124 - 7790081
Alignment:
Q  232 aaccaccaaataatcatctgttgagtggtcataaccaaaaccat 275  Q
    ||||||||| ||||||||| |||| |||||||||||||||||||    
T  7790124 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7790081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 281
Target Start/End: Complemental strand, 7813508 - 7813469
Alignment:
Q  242 taatcatctgttgagtggtcataaccaaaaccatatagat 281  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  7813508 taatcatctcttgactggtcataaccaaaaccatatagat 7813469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 281
Target Start/End: Complemental strand, 7822997 - 7822958
Alignment:
Q  242 taatcatctgttgagtggtcataaccaaaaccatatagat 281  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  7822997 taatcatctcttgactggtcataaccaaaaccatatagat 7822958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 606
Target Start/End: Original strand, 49044590 - 49044669
Alignment:
Q  527 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacgta 606  Q
    ||||| || ||||||  |||||||| ||||||  | ||||||||||||||||||  |||||||||| || ||||||||||    
T  49044590 ggtaatttcaaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgta 49044669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 544 - 606
Target Start/End: Complemental strand, 7800337 - 7800275
Alignment:
Q  544 aatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacgta 606  Q
    |||||||| || |||||||||||| ||||||||||||  | |||||||| || ||||||||||    
T  7800337 aatttgcaaagcggggatcagagacaagagaaaaccatgatttacaaacacacttgaaacgta 7800275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 7908383 - 7908325
Alignment:
Q  215 ggatgataggatattggaaccaccaaataatcatctgttgagtggtcataaccaaaacc 273  Q
    |||| |||||| | || ||||||||| ||||||||| |||| |||||||||||||||||    
T  7908383 ggattataggacaatgaaaccaccaagtaatcatctcttgactggtcataaccaaaacc 7908325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 548 - 606
Target Start/End: Original strand, 45385169 - 45385227
Alignment:
Q  548 tgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacgta 606  Q
    |||| |||||| ||| ||||  |||||||||||| ||||||||||| ||||||||||||    
T  45385169 tgcaaagtgggtatcggagacgagagaaaaccaagacttacaaacggatttgaaacgta 45385227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 369
Target Start/End: Original strand, 48705465 - 48705527
Alignment:
Q  307 ggaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtagag 369  Q
    |||| ||||| | ||||||||||||||| ||||||  ||||| ||||||||||| ||||||||    
T  48705465 ggaaccaaaaggtgacaaaggtatttgtttgtgaaatccagtagatggattccacaggtagag 48705527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 45384903 - 45384952
Alignment:
Q  227 attggaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 276  Q
    |||| ||||||||||||||||| |||||| || ||||| |||||||||||    
T  45384903 attgaaaccaccaaataatcatttgttgactgatcatacccaaaaccata 45384952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 604
Target Start/End: Original strand, 48148082 - 48148123
Alignment:
Q  563 agagataagagaaaaccaatacttacaaacgcatttgaaacg 604  Q
    ||||||||||||||||||| ||||||| || |||||||||||    
T  48148082 agagataagagaaaaccaagacttacagacacatttgaaacg 48148123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 48735417 - 48735466
Alignment:
Q  227 attggaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 276  Q
    |||| ||||||||| |||||||||||| | |||||||| |||||||||||    
T  48735417 attgaaaccaccaagtaatcatctgttaaatggtcatacccaaaaccata 48735466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 363
Target Start/End: Complemental strand, 48852621 - 48852576
Alignment:
Q  318 gagacaaaggtatttgtatgtgaagcccagtggatggattccatag 363  Q
    ||||||||||||||||| ||||||  || |||||||||||||||||    
T  48852621 gagacaaaggtatttgtttgtgaactccggtggatggattccatag 48852576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 48852886 - 48852849
Alignment:
Q  41 tcatgacggaaagctaaccaatgaatagccccattaaa 78  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  48852886 tcatgacgaaaagccaaccaatgaatagccccattaaa 48852849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 529 - 601
Target Start/End: Complemental strand, 7786158 - 7786086
Alignment:
Q  529 taagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaa 601  Q
    ||||||| |||||  |||||||| | || ||||||||||||| ||||| |||   ||||||||||||||||||    
T  7786158 taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaacgcatttgaa 7786086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 533 - 604
Target Start/End: Complemental strand, 33133751 - 33133677
Alignment:
Q  533 ttgaaaatgcaaatttgcacagtggggatca---gagataagagaaaaccaatacttacaaacgcatttgaaacg 604  Q
    |||||||||| |||||||| ||||  |||||   ||||||||||||||||||  |||||||| | ||||||||||    
T  33133751 ttgaaaatgcgaatttgcaaagtgaagatcattagagataagagaaaaccaaagcttacaaatgaatttgaaacg 33133677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 596
Target Start/End: Original strand, 37827356 - 37827424
Alignment:
Q  528 gtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcat 596  Q
    ||||||||||||||  |||||||| ||| ||||| ||| |||||||  |||||  ||||||||||||||    
T  37827356 gtaagttgaaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaacgcat 37827424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 48147757 - 48147801
Alignment:
Q  232 aaccaccaaataatcatctgttgagtggtcataaccaaaaccata 276  Q
    ||||||||| |||||||||||| | |||||||| |||||||||||    
T  48147757 aaccaccaagtaatcatctgttaactggtcatacccaaaaccata 48147801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 49048701 - 49048749
Alignment:
Q  318 gagacaaaggtatttgtatgtgaagcccagtggatggattccataggta 366  Q
    ||||||||||||||||| ||||||  | ||||||||||||||| |||||    
T  49048701 gagacaaaggtatttgtctgtgaactctagtggatggattccaaaggta 49048749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 24416026 - 24415947
Alignment:
Q  1 cctttccgttaaatgaaaggccgcaacaaagaaatctatctcatgacggaaagctaaccaatgaatagccccattaaaga 80  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24416026 cctttccgttaaatgaaaggctgcaacaaagaaatctatctcatgacggaaagctaaccaatgaatagccccattgaaga 24415947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 528 - 604
Target Start/End: Complemental strand, 24309893 - 24309817
Alignment:
Q  528 gtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacg 604  Q
    ||||||||||||||  |||||||| |||| | |||||||||||||||||||||  ||||||||||| ||||||||||    
T  24309893 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacg 24309817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 564 - 604
Target Start/End: Complemental strand, 24322142 - 24322102
Alignment:
Q  564 gagataagagaaaaccaatacttacaaacgcatttgaaacg 604  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  24322142 gagataagagaaaaccaagacttacaaacgcatttgaaacg 24322102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 567 - 604
Target Start/End: Complemental strand, 24415514 - 24415477
Alignment:
Q  567 ataagagaaaaccaatacttacaaacgcatttgaaacg 604  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  24415514 ataagagaaaaccaagacttacgaacgcatttgaaacg 24415477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 24367188 - 24367144
Alignment:
Q  232 aaccaccaaataatcatctgttgagtggtcataaccaaaaccata 276  Q
    ||||||||| |||||||||||||| | |||||| |||||||||||    
T  24367188 aaccaccaagtaatcatctgttgacttgtcatacccaaaaccata 24367144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 24369533 - 24369477
Alignment:
Q  220 ataggatattggaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 276  Q
    |||||||| || ||||||||  |||||||||||||| | |||||| |||||||||||    
T  24369533 ataggatactgaaaccaccaggtaatcatctgttgactcgtcatagccaaaaccata 24369477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 527 - 606
Target Start/End: Complemental strand, 15348579 - 15348500
Alignment:
Q  527 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacgta 606  Q
    ||||| |||||||||  |||||||  |||  |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15348579 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgta 15348500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 368
Target Start/End: Complemental strand, 12200348 - 12200212
Alignment:
Q  232 aaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaaaatgagacaaaggtatt 331  Q
    ||||||||| ||||||||| ||||  |||||||||||||||||||||||||||    ||| |||   | ||| ||  |||||||| ||||||||||||||    
T  12200348 aaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatgtcgatggtatgcatgtaacttcaaatcaaaaggagacaaaggtatt 12200249  T
Q  332 tgtatgtgaagcccagtggatggattccataggtaga 368  Q
    | | |||||| || || |||||||||||||| |||||    
T  12200248 tttttgtgaaacctagaggatggattccatacgtaga 12200212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 368
Target Start/End: Complemental strand, 12444776 - 12444640
Alignment:
Q  232 aaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaaaatgagacaaaggtatt 331  Q
    ||||||||| ||||||||| ||||  |||||||||||||||||||||||||||    ||| |||   | ||| ||  |||||||| ||||||||||||||    
T  12444776 aaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatgtcgatggtatgcatgtaacttcaaatcaaaaggagacaaaggtatt 12444677  T
Q  332 tgtatgtgaagcccagtggatggattccataggtaga 368  Q
    | | |||||| || || |||||||||||||| |||||    
T  12444676 tttttgtgaaacctagaggatggattccatacgtaga 12444640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 539 - 603
Target Start/End: Complemental strand, 12200012 - 12199948
Alignment:
Q  539 atgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaac 603  Q
    |||| |||||||| |||| |||||||||||||||||||||||  |||||||||| ||||||||||    
T  12200012 atgcgaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaac 12199948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 539 - 603
Target Start/End: Complemental strand, 12444440 - 12444376
Alignment:
Q  539 atgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaac 603  Q
    |||| |||||||| |||| |||||||||||||||||||||||  |||||||||| ||||||||||    
T  12444440 atgcgaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaac 12444376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 544 - 603
Target Start/End: Complemental strand, 12195001 - 12194942
Alignment:
Q  544 aatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaac 603  Q
    |||||||| |||| ||||||||||||||||| |||||  ||||||||| |||||||||||    
T  12195001 aatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaac 12194942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 544 - 603
Target Start/End: Complemental strand, 12439429 - 12439370
Alignment:
Q  544 aatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaac 603  Q
    |||||||| |||| ||||||||||||||||| |||||  ||||||||| |||||||||||    
T  12439429 aatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaac 12439370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 220 - 362
Target Start/End: Complemental strand, 48883854 - 48883712
Alignment:
Q  220 ataggatattggaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaaaatga 319  Q
    |||||| |||| ||||||||  ||||||||| ||||  ||||||||||||||||||||||||||| | ||| || |   | | |  |||||| |||| ||    
T  48883854 ataggacattgaaaccaccatgtaatcatctcttgacgggtcataaccaaaaccatatagatgatcgaaataatgtacttctgaaatggaataaaaagga 48883755  T
Q  320 gacaaaggtatttgtatgtgaagcccagtggatggattccata 362  Q
    ||||||||||||||| ||||||  |||||| ||||||||||||    
T  48883754 gacaaaggtatttgtttgtgaaatccagtgtatggattccata 48883712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 528 - 606
Target Start/End: Complemental strand, 1812141 - 1812063
Alignment:
Q  528 gtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacgta 606  Q
    ||||||||||||||  |||||||| |||||||||  |||||||||||||||||  |||||||||| |||||| ||||||    
T  1812141 gtaagttgaaaatgataatttgcaaagtggggatttgagataagagaaaaccataacttacaaacccatttggaacgta 1812063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 524 - 604
Target Start/End: Complemental strand, 29695872 - 29695792
Alignment:
Q  524 ggtggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacg 604  Q
    ||||||||||||||||||  |||||||| |||| || | ||| |||||||| |||||  ||||||||||||||||||||||    
T  29695872 ggtggtaagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatttgaaacg 29695792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 563 - 604
Target Start/End: Original strand, 42562728 - 42562769
Alignment:
Q  563 agagataagagaaaaccaatacttacaaacgcatttgaaacg 604  Q
    |||||| |||||||||||| ||||||||||||||||||||||    
T  42562728 agagattagagaaaaccaagacttacaaacgcatttgaaacg 42562769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 606
Target Start/End: Complemental strand, 29687768 - 29687689
Alignment:
Q  527 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacgta 606  Q
    |||||||||||||||  |||||||| |||| || | ||| || |||||||||||| |||||||||| || ||||| ||||    
T  29687768 ggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgta 29687689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 278
Target Start/End: Original strand, 42562375 - 42562426
Alignment:
Q  227 attggaaccaccaaataatcatctgttgagtggtcataaccaaaaccatata 278  Q
    |||| |||||| |||||||||| ||||||||| ||||| |||||||||||||    
T  42562375 attgaaaccactaaataatcatttgttgagtgatcatacccaaaaccatata 42562426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 368
Target Start/End: Original strand, 42562439 - 42562498
Alignment:
Q  309 aatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtaga 368  Q
    |||||| | ||||||||||||||||| ||||| | ||  |||||||||||||||||||||    
T  42562439 aatcaataggagacaaaggtatttgtttgtgatgtccgatggatggattccataggtaga 42562498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 604
Target Start/End: Original strand, 29712866 - 29712907
Alignment:
Q  563 agagataagagaaaaccaatacttacaaacgcatttgaaacg 604  Q
    ||||||||||||||||||  ||||||||||||| ||||||||    
T  29712866 agagataagagaaaaccataacttacaaacgcacttgaaacg 29712907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 29696259 - 29696203
Alignment:
Q  220 ataggatattggaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 276  Q
    |||||| |||| || |||||| |||||||||||||| | |||||| |||||||||||    
T  29696259 ataggacattgaaatcaccaagtaatcatctgttgactcgtcatacccaaaaccata 29696203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 528 - 604
Target Start/End: Complemental strand, 11978 - 11902
Alignment:
Q  528 gtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacg 604  Q
    ||||||||||||||  |||||||| ||||   |||||||||||||||||||||  ||||||||||| ||||||||||    
T  11978 gtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttgaaacg 11902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 21015849 - 21015801
Alignment:
Q  233 accaccaaataatcatctgttgagtggtcataaccaaaaccatatagat 281  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  21015849 accaccaaataatcatctgttgatgggtcatacccaaaaccatatagat 21015801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 368
Target Start/End: Complemental strand, 21015764 - 21015714
Alignment:
Q  318 gagacaaaggtatttgtatgtgaagcccagtggatggattccataggtaga 368  Q
    ||||||||||||||||| ||||||  | |||||||||||||||||||||||    
T  21015764 gagacaaaggtatttgtttgtgaactctagtggatggattccataggtaga 21015714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 21979677 - 21979727
Alignment:
Q  231 gaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagat 281  Q
    |||||||||| ||||||| | |||| |||||||||||||||||||||||||    
T  21979677 gaaccaccaagtaatcatttcttgactggtcataaccaaaaccatatagat 21979727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 302 - 375
Target Start/End: Original strand, 21979751 - 21979824
Alignment:
Q  302 aatttggaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtagaggcttga 375  Q
    ||||||||||||| | ||||||||||||||||| | ||||| ||||| || || ||||||| |||||| |||||    
T  21979751 aatttggaatcaagaggagacaaaggtatttgtttttgaagtccagtagacgggttccatatgtagagtcttga 21979824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 21016029 - 21015992
Alignment:
Q  41 tcatgacggaaagctaaccaatgaatagccccattaaa 78  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  21016029 tcatgacgaaaagccaaccaatgaatagccccattaaa 21015992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 605
Target Start/End: Original strand, 21980022 - 21980083
Alignment:
Q  544 aatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacgt 605  Q
    |||| ||| ||| ||||| |||||| |||||||||||| |||||||||| || |||||||||    
T  21980022 aattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacacttgaaacgt 21980083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 47452011 - 47452074
Alignment:
Q  305 ttggaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtaga 368  Q
    |||||| ||||| ||| ||||||||||||| ||||||  ||||||||||||||||||| |||||    
T  47452011 ttggaaccaaaaggaggcaaaggtatttgtttgtgaactccagtggatggattccatatgtaga 47452074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 530 - 606
Target Start/End: Original strand, 11024901 - 11024977
Alignment:
Q  530 aagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacgta 606  Q
    ||||| ||||||| | |||||| |||   |||||||||||||||  |||||  ||||||||||||||||||||||||    
T  11024901 aagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgta 11024977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 11005994 - 11006041
Alignment:
Q  233 accaccaaataatcatctgttgagtggtcataaccaaaaccatataga 280  Q
    |||||||| ||||||||| |||| |||||||| |||||||||||||||    
T  11005994 accaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 11006041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 11024569 - 11024616
Alignment:
Q  233 accaccaaataatcatctgttgagtggtcataaccaaaaccatataga 280  Q
    |||||||| ||||||||| |||| |||||||| |||||||||||||||    
T  11024569 accaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 11024616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 536 - 606
Target Start/End: Original strand, 11006332 - 11006402
Alignment:
Q  536 aaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacgta 606  Q
    ||||||| | |||||| |||| ||||||||||||||||  |||||  |||||||||| || ||||||||||    
T  11006332 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgta 11006402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 11006078 - 11006123
Alignment:
Q  323 aaaggtatttgtatgtgaagcccagtggatggattccataggtaga 368  Q
    |||||||||||| || || | |||||||||||||||||||||||||    
T  11006078 aaaggtatttgtctgagacgtccagtggatggattccataggtaga 11006123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 11015641 - 11015686
Alignment:
Q  323 aaaggtatttgtatgtgaagcccagtggatggattccataggtaga 368  Q
    |||||||||||| ||||| | ||||| |||||||||||||||||||    
T  11015641 aaaggtatttgtttgtgatgtccagttgatggattccataggtaga 11015686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 606
Target Start/End: Original strand, 11015884 - 11015965
Alignment:
Q  525 gtggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaatacttacaaacgcatttgaaacgta 606  Q
    |||| ||||| ||||||| | |||||| |||   |||||||||||||||  ||| |  ||||||||||||||||||||||||    
T  11015884 gtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaacaatgacttacaaacgcatttgaaacgta 11015965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University