View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_31 (Length: 371)
Name: NF9778_low_31
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 2835612 - 2835252
Alignment:
| Q |
1 |
caaaggtacgaatcaaccaacttagcaaccttaaccaaagcagcaccacttttagcaccttcattatccaaactaacaaacctcttaacaagcctaataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2835612 |
caaaggtacgaatcaaccaacttagcaaccttaaccaaagcagcaccacttttagcaccttcattatccaaactaacaaacctcttaacaagcctaataa |
2835513 |
T |
|
| Q |
101 |
caagctcaaaatccaaaagtgtcccacaagtgtgactaaaagaaggaataacaagttctttcaaacaagcttgatctaactgccatgaaattctcttctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2835512 |
caagctcaaaatccaaaagtgtcccacaagtgtgactaaaagaaggaataacaagttctttcaaacaagcttgatctaactgccatgaaattctcttctc |
2835413 |
T |
|
| Q |
201 |
tagctcttgtctatagcttccatcaacacctaccatgttagctgttctcaatagcctaaggagaaagttacatggaattgaatctttctctggtggtaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2835412 |
tagctcttgtctatagcttccatcaacacctaccatgttagctgttctcaatagcctaaggagaaagttacatggaattgaatctttctctggtggtaga |
2835313 |
T |
|
| Q |
301 |
acattaactaaggtttctacaaagaaccttttcttcatccatgatgttgttacactctctg |
361 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2835312 |
acattaactaaggtttctacaaagaaccttttcttcatccatgatgttgttacactctctg |
2835252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 11 - 356
Target Start/End: Original strand, 44265365 - 44265710
Alignment:
| Q |
11 |
aatcaaccaacttagcaaccttaaccaaagcagcaccacttttagcaccttcattatccaaactaacaaacctcttaacaagcctaataacaagctcaaa |
110 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||| | || |||| ||| ||||||| |||||||||||| | ||||||||||||||||| |
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| T |
44265365 |
aatcaaccaatttagcaaccttaaccaaagcagcaccagttttaactccatcatgatctaaactaataaacctcttaaccaacctaataacaagctcaac |
44265464 |
T |
|
| Q |
111 |
atccaaaagtgtcccacaagtgtgactaaaagaaggaataacaagttctttcaaacaagcttgatctaactgccatgaaattctcttctctagctcttgt |
210 |
Q |
| |
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||||||||| ||||||||||| ||||| |||||||| || | ||||||||||| ||||||||||||||||||||||||||| ||||| || || | |
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| T |
44265465 |
atccaaaagggtcccacaagtatgactgaaagaaggtatcatgagttctttcaatgaagcttgatctaactgccatgaaattcgattctcaagatcggtt |
44265564 |
T |
|
| Q |
211 |
ctatagcttccatcaacacctaccatgttagctgttctcaatagcctaaggagaaagttacatggaattgaatctttctctggtggtagaacattaacta |
310 |
Q |
| |
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| ||| | || ||| |||||||| |||||| | | || | |||||| ||||| |||||||| |||||||| |||||||| |||||| | |||| |
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| T |
44265565 |
cgataagtagactcgacaagaaccatgtttgctgttttaagaaggcgaaggaggaagttgcatggaatggaatctttgtctggtggaagaacactgacta |
44265664 |
T |
|
| Q |
311 |
aggtttctacaaagaaccttttcttcatccatgatgttgttacact |
356 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44265665 |
aggtttcaacaaagaaccttttcttcatccatgatgttgttacact |
44265710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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