View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9778_low_32 (Length: 364)
Name: NF9778_low_32
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 351
Target Start/End: Complemental strand, 38847210 - 38846889
Alignment:
| Q |
7 |
ataacaacactcctcaagctctaattaactaactcatcaactagttccacaacaaaaaaca-tgtatgcttctacttcttttacttcaccactcttccat |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||| ||||||||||||||||||||||||||| |||| ||||| |
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| T |
38847210 |
ataacaacactcctcaagctctaattaactaactcatcaaat---tccccaacagaaaacaatgtatgcttctacttcttttacttcacaactcctccat |
38847114 |
T |
|
| Q |
106 |
gagcttcttgtagaatcacacacaagaaggttactcttccaaaatccaattgattatcaatcactaaccaactcccctgttctcacacacaataacaatt |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||| |||||||||||||||||| |
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| T |
38847113 |
gagcttcttgtagaatcacacacaagaaggttactcttccaaaacccagttgatcatcaat---------------------tcacacacaataacaatt |
38847035 |
T |
|
| Q |
206 |
caactaactcgtattttggagctcgtgagtttgaatcaaatgttgtgatgatagtttctgtcctattgtgtgctattatttgctcaattgcattaaactc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38847034 |
caactaactcgtattttggagctcgtgagtttgaatcaaatgttgtgatgatagtttctgtcctattgtgtgctattatttgctcaattgcattaaactc |
38846935 |
T |
|
| Q |
306 |
cattgtaaggtgtgccctaaacgtagccatcatcaacgactcttct |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38846934 |
cattgtaaggtgtgccctaaacgtagccatcatcaacgactcttct |
38846889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 7 - 305
Target Start/End: Complemental strand, 38827632 - 38827336
Alignment:
| Q |
7 |
ataacaacactcctcaagctctaattaactaactcatcaactagttccacaacaaaaaaca-tgtatgcttctacttcttttacttcaccactcttccat |
105 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| | ||| ||||| |||||| ||||||||||||||||||||||||||| |||| ||||| |
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| T |
38827632 |
ataacaacaaccctcaagctctaattaactaacttatcaaat---tccccaacagaaaacaatgtatgcttctacttcttttacttcacaactcctccat |
38827536 |
T |
|
| Q |
106 |
gagcttcttgtagaatcacacacaagaaggttactcttccaaaatccaattgattatcaatcactaaccaactcccctgttctcacacacaataacaatt |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | |||| |
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|
| T |
38827535 |
gagcttcttgtagaatcacacacaagaaggttactcttccaaaatccaattgattatcaatcaccaaccagctcccctgttctcacacacaaccataatt |
38827436 |
T |
|
| Q |
206 |
caactaactcgtattttggagctcgtgagtttgaatcaaatgttgtgatgatagtttctgtcctattgtgtgctattatttgctcaattgcattaaactc |
305 |
Q |
| |
|
|||||||||| ||||||||| |||||| ||||| ||||||||||||||||| || | || |||||||||||| ||||||||||| |||| |||||||| |
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|
| T |
38827435 |
caactaactcatattttggaattcgtgaatttgatgcaaatgttgtgatgatacttgcagttctattgtgtgctcttatttgctcacttgccttaaactc |
38827336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 55 - 321
Target Start/End: Original strand, 38850556 - 38850823
Alignment:
| Q |
55 |
acaacaaaaaaca-tgtatgcttctacttcttttacttcaccactcttccatgagcttcttgtagaatcacacacaagaaggttactcttccaaaatcca |
153 |
Q |
| |
|
|||| |||||||| ||||| |||||||||| || ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38850556 |
acaaaaaaaaacaatgtatacttctacttccttaacttcacaactcctccatgagcttcttgtagaatcacacacaagaaggttactcttccaaaatcca |
38850655 |
T |
|
| Q |
154 |
attgattatcaatcactaaccaactcccctgttctcacacacaataacaattcaactaactcgtattttggagctcgtgagtttgaatcaaatgttgtga |
253 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||| | ||| ||||| |||||||||| |||| |||||||||||||||| ||||| ||||||||||||| |
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| T |
38850656 |
attgattttcaatcaccaaccagctcccctgtgttaacaaacaatcacaattcaacagactcaaattttggagctcgtgaatttgattcaaatgttgtga |
38850755 |
T |
|
| Q |
254 |
tgatagtttctgtcctattgtgtgctattatttgctcaattgcattaaactccattgtaaggtgtgcc |
321 |
Q |
| |
|
|||||||| | |||||||| |||||| ||||||||||| |||||||||||||||| ||||||||||| |
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|
| T |
38850756 |
tgatagttgcagtcctattatgtgcttttatttgctcacttgcattaaactccatcataaggtgtgcc |
38850823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 38865459 - 38865153
Alignment:
| Q |
19 |
ctcaagctctaattaactaactcatcaactagttccacaacaaaaaaca-tgtatgct---tctacttcttttacttcaccactcttccatgagcttctt |
114 |
Q |
| |
|
||||| |||||||||| ||||| ||||||||||||| |||||||||||| |||||||| |||||||| |||||||||| |||| |||||||||||||| |
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|
| T |
38865459 |
ctcaatctctaattaaataact-atcaactagttccccaacaaaaaacaatgtatgctgcttctacttcctttacttcacaactcgtccatgagcttctt |
38865361 |
T |
|
| Q |
115 |
gtagaatcacacacaagaaggttactcttccaaaatccaattgattatcaatcactaaccaactcccctgttctcacacacaataac---aattcaacta |
211 |
Q |
| |
|
|| ||||| |||||||||||||||||||| ||| | |||||||| ||||||||||||| ||||||| |||| | ||| | |||||| |||||||| |
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|
| T |
38865360 |
gtggaatctcacacaagaaggttactctttcaagacccaattgaacatcaatcactaactaactcccatgttttaacaaataataaccataattcaacag |
38865261 |
T |
|
| Q |
212 |
actcgtattttggagctcgtgagtttgaatcaaatgttgtgatgatagtttctgtcctattgtgtgctattatttgctcaattgcattaaactccattgt |
311 |
Q |
| |
|
|||| ||||||||||||||||| || || ||||||||| | |||||| || | || ||||||||||| ||||||||||| |||||||||||||||| | |
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|
| T |
38865260 |
actcatattttggagctcgtgaattcgattcaaatgttataatgatacttgcagttttattgtgtgctcttatttgctcacttgcattaaactccatcat |
38865161 |
T |
|
| Q |
312 |
aaggtgtg |
319 |
Q |
| |
|
|||||||| |
|
|
| T |
38865160 |
aaggtgtg |
38865153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 38841407 - 38841105
Alignment:
| Q |
19 |
ctcaagctctaattaactaactcatcaactagttccacaacaaaaaacatgtatgcttctacttcttttacttcaccactcttccatgagcttcttgtag |
118 |
Q |
| |
|
||||||||||||| |||||||||||||| || |||| ||| |||||||||||||||||||| ||| |||||| ||| | | ||| ||||||||||||| | |
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|
| T |
38841407 |
ctcaagctctaataaactaactcatcaattacttcctcaagaaaaaacatgtatgcttctatttcctttactacacaaatattcaatgagcttcttgtgg |
38841308 |
T |
|
| Q |
119 |
aatcacacacaagaaggttactcttccaaaatccaattgattatcaatcactaaccaactcccctgttctcacacacaataacaattcaactaactcgta |
218 |
Q |
| |
|
|||| |||| ||||||||||||| | ||||| ||| ||||| ||||||||||||||||||||||| | | ||| |||| | |||||||| |||| | |
|
|
| T |
38841307 |
aatctcacataagaaggttactcattcaaaacccagttgatcatcaatcactaaccaactcccctactttaacaaacaaccataattcaacagactcaaa |
38841208 |
T |
|
| Q |
219 |
ttttggagctcgtgagtttgaatcaaatgttgtgatgatagtttctgtcctattgtgtgctattatttgctcaattgcattaaactccattgtaaggtgt |
318 |
Q |
| |
|
|||||||| |||||| ||||| ||||| |||||||||||| || | ||| |||| |||| | ||||||||||| ||||||||||||||||| | |||||| |
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|
| T |
38841207 |
ttttggagatcgtgaatttgattcaaaagttgtgatgatacttgcagtcatattatgtgtttttatttgctcacttgcattaaactccattatcaggtgt |
38841108 |
T |
|
| Q |
319 |
gcc |
321 |
Q |
| |
|
||| |
|
|
| T |
38841107 |
gcc |
38841105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 35 - 318
Target Start/End: Complemental strand, 38859127 - 38858840
Alignment:
| Q |
35 |
ctaactcatcaactagttccac-aacaaaaaacatgtatgcttctacttcttttacttcaccactcttccatgagcttcttgtagaatcacacacaagaa |
133 |
Q |
| |
|
|||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||| |||||||||| |
|
|
| T |
38859127 |
ctaactcatcaattagttcccccaacagaaaacatgtatgcttctacttcttttacttcaccacttctacatgagcttcttgtggaatctcacacaagaa |
38859028 |
T |
|
| Q |
134 |
ggttactcttccaaaatccaattgattatcaatcact---aaccaactcccctgttctcacacacaataacaattcaactaactcgtattttggagctcg |
230 |
Q |
| |
|
|||||||| | ||||| ||| ||||| |||||||||| || |||| |||||||| |||| |||| ||||||||||| |||| | || |||||||| |
|
|
| T |
38859027 |
ggttactcattcaaaacccagttgatcatcaatcacttaaaatcaacccccctgttttcacgaacaacaacaattcaaccgactcaaagttcggagctcg |
38858928 |
T |
|
| Q |
231 |
tgagtttgaatcaaatgttgtgatgatagtttctgtcctattgtgtgctattatttgctcaattgcattaaactccattgtaaggtgt |
318 |
Q |
| |
|
||| ||||| ||| |||||||||||||| || | || ||||| |||||| ||||||| | | ||| |||||||||||| |||||||| |
|
|
| T |
38858927 |
tgaatttgattcagatgttgtgatgataattgcagttctattatgtgcttttatttgtttacttgtattaaactccatcataaggtgt |
38858840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 38862023 - 38861783
Alignment:
| Q |
19 |
ctcaagctctaattaactaactcatcaactagttccacaacaaaaaaca-tgtatgcttctacttcttttacttcaccactcttccatgagcttcttgta |
117 |
Q |
| |
|
||||||||||||||||||||||||| || | ||| |||||||||||| |||||||||||||||| |||||||||||||| ||||||| |||||||| |
|
|
| T |
38862023 |
ctcaagctctaattaactaactcataaaat---tccccaacaaaaaacaatgtatgcttctacttcctttacttcaccacttctccatgaacttcttgtg |
38861927 |
T |
|
| Q |
118 |
gaatcacacacaagaaggttactcttccaaaatccaattgattatcaatcact---aaccaactcccctgttctcacacacaataacaattcaactaact |
214 |
Q |
| |
|
||||| |||||||||||||||||| | ||||| ||| ||||| |||||||||| || |||||||| | || ||||| | | |||||||||| ||| |
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|
| T |
38861926 |
gaatctcacacaagaaggttactcattcaaaacccagttgatcatcaatcacttaaaatcaactcccgtattttcacaaatagccacaattcaaccgact |
38861827 |
T |
|
| Q |
215 |
cgtattttggagctcgtgagtttgaatcaaatgttgtgatgata |
258 |
Q |
| |
|
| |||||| |||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
38861826 |
catattttagagctcctgaatttgattcaaatgttgtgatgata |
38861783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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