View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9778_low_33 (Length: 357)
Name: NF9778_low_33
Description: NF9778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9778_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 345
Target Start/End: Original strand, 1727095 - 1727426
Alignment:
| Q |
15 |
acaagcatgaaacaaaggagaatgaattagtttctcagtagaagcacctcttaagaggaagcaggttttggagaaatcaaagaaacatccttgtgctgag |
114 |
Q |
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| T |
1727095 |
acaagcatgaaacaaagaagaatgaattagtttctcagtagaagcaccgcttaagaggatgcatgttctagagaaatcaaagaaacctccttatgctgag |
1727194 |
T |
|
| Q |
115 |
ttcatacaaaatggtatgtattcctactttgttccaaaag-tgggaaagctaaggttcttaacgagtcaaagtcaagggctttagagtctaaggatctaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1727195 |
ttcatacaaaatggtatgtattcctactttgttctaaaagctggaaaagctaaggttcttaacaagtcaaagtcaagggctttagagtctaaggatctaa |
1727294 |
T |
|
| Q |
214 |
tcaaatcaaaaccaaatattccagagtccaaggttctaaatagttcaaaacctaaagctaagaagaattcaagacctaaaacctttaaaccaaaagtctt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1727295 |
tcaaatcaaaaccaaatattccagagtccaaggttctgaatagttcaaaacctaaagctaagaagaattcaagacctaaaacctttaaaccaaaagtctt |
1727394 |
T |
|
| Q |
314 |
gaatgattctaagccgcatatcttgaagccta |
345 |
Q |
| |
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||||||||||||||| |||||||||||||||| |
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| T |
1727395 |
gaatgattctaagccacatatcttgaagccta |
1727426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 213 - 345
Target Start/End: Original strand, 15669120 - 15669252
Alignment:
| Q |
213 |
atcaaatcaaaaccaaatattccagagtccaaggttctaaatagttcaaaacctaaagctaagaagaattcaagacctaaaacctttaaaccaaaagtct |
312 |
Q |
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| T |
15669120 |
atcaaatcaaaaccaaagattccaatgtccaaagttctgaatagtccaaaacctaaagctaataagaattcaaggcctaaaacttttaaaccaaaagtct |
15669219 |
T |
|
| Q |
313 |
tgaatgattctaagccgcatatcttgaagccta |
345 |
Q |
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| T |
15669220 |
tcaatgattctaatccatatagcttgaagccta |
15669252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 191 - 298
Target Start/End: Original strand, 19220144 - 19220251
Alignment:
| Q |
191 |
ggctttagagtctaaggatctaatcaaatcaaaaccaaatattccagagtccaaggttctaaatagttcaaaacctaaagctaagaagaattcaagacct |
290 |
Q |
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||||| |||||||||| ||| | ||||||||||||||||| | |||||||||||||||| || ||||||||||||||||||| ||||||||||||| | |
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| T |
19220144 |
ggcttcagagtctaagtttctgaacaaatcaaaaccaaatacttcagagtccaaggttctgaagagttcaaaacctaaagctatgaagaattcaagatca |
19220243 |
T |
|
| Q |
291 |
aaaacctt |
298 |
Q |
| |
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|||||||| |
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| T |
19220244 |
aaaacctt |
19220251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 182
Target Start/End: Complemental strand, 17234248 - 17234088
Alignment:
| Q |
23 |
gaaacaaaggagaatgaattagtttctcagtagaagcacctcttaagaggaagcaggttttggagaaatcaaagaaacatccttgtgctgagttcataca |
122 |
Q |
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||||||| |||||| ||||| |||||| | ||||||||||||||||| || ||| | | |||||||||||||||| ||||||| ||||| ||||| |
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| T |
17234248 |
gaaacaacggagaaggaattggtttcttaaaagaagcacctcttaagacgatgcaaaatctagagaaatcaaagaaacctccttgttatgagtgtataca |
17234149 |
T |
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| Q |
123 |
aaatggtatgtattcctactttgttccaaaag-tgggaaagctaaggttcttaacgagtca |
182 |
Q |
| |
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|| |||||||||||||||||||||||||| ||| ||| |||||||||| ||| ||||| |
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| T |
17234148 |
gaacaatatgtattcctactttgttccaaaagctggaaaaactaaggttctgaacaagtca |
17234088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 316
Target Start/End: Original strand, 11450873 - 11451103
Alignment:
| Q |
87 |
gaaatcaaagaaacatccttgtgctgagttcatacaaaatggtatgtattcctactttgttccaaaag-tgggaaagctaaggttcttaacgagtcaaag |
185 |
Q |
| |
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|||| |||||||| ||||||| ||||| ||||||||| ||| |||||||| ||||||||||||| | || |||||||||||||| ||| ||||| | |
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| T |
11450873 |
gaaaacaaagaaaactccttgttatgagtgcatacaaaagggtttgtattcccactttgttccaaaggctgaaaaagctaaggttctgaacaagtcagaa |
11450972 |
T |
|
| Q |
186 |
tcaagggctttagagtctaaggatctaatcaaatcaaaaccaaatattccagagtccaaggttctaaatagttcaaaacctaaagctaagaagaattcaa |
285 |
Q |
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|| | | ||||||||||||| ||| ||||||||||||||||| | || || |||| |||| || ||||||||||| ||||| | ||| |||||| |
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| T |
11450973 |
tctgagaccttagagtctaaggttctgatcaaatcaaaaccaaagactcttgaactcaagtttctgaagagttcaaaacccaaagcaaggaaagattcaa |
11451072 |
T |
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| Q |
286 |
gacctaaaacctttaaaccaaaagtcttgaa |
316 |
Q |
| |
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|||| ||||| | |||| ||||||||||||| |
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| T |
11451073 |
gaccaaaaacttgtaaatcaaaagtcttgaa |
11451103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 87 - 317
Target Start/End: Complemental strand, 11543862 - 11543631
Alignment:
| Q |
87 |
gaaatcaaagaaacatccttgtgctgagttcatacaaaatggtatgtattcctactttgttccaaaag-tgggaaagctaaggttcttaacgagtcaaag |
185 |
Q |
| |
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|||| ||||||||| ||||||| ||||| ||||||||| ||| |||||||| ||||||||||||| | || |||||||||||||| ||| ||||| | |
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| T |
11543862 |
gaaaacaaagaaacctccttgttatgagtgcatacaaaagggtttgtattcccactttgttccaaaggctgaaaaagctaaggttctgaacaagtcagaa |
11543763 |
T |
|
| Q |
186 |
tcaagggctttagagtctaaggatctaatcaaatcaaaaccaaatattccagagtccaaggttctaaatagttcaaaacctaaagctaagaagaattcaa |
285 |
Q |
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|| | | ||| | ||||||| ||| ||||||||||||||||| | || || |||| ||| || ||||||||||| |||| | ||| |||||| |
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| T |
11543762 |
tctgagaccttacaatctaaggttctgatcaaatcaaaaccaaagactcttgaactcaagtttcagaagagttcaaaacccaaagtaaggaaagattcaa |
11543663 |
T |
|
| Q |
286 |
gacctaaaacctttaaaccaaaagtcttgaat |
317 |
Q |
| |
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|||| ||||| | |||| |||||||||||||| |
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| T |
11543662 |
gaccaaaaacttgtaaatcaaaagtcttgaat |
11543631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 4447191 - 4447123
Alignment:
| Q |
236 |
agagtccaaggttctaaatagttcaaaacctaaagctaagaagaattcaagacctaaaacctttaaacc |
304 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||| ||||||||||||||||| | ||||||||||||| |
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| T |
4447191 |
agagcccaaggttctaaagagttcaaaacctaaatctaagaagaattcaagatatgaaacctttaaacc |
4447123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 20093975 - 20093884
Alignment:
| Q |
24 |
aaacaaaggagaatgaattagtttctcagtagaagcacctcttaagaggaagcaggttttggagaaatcaaagaaacatccttgtgctgagt |
115 |
Q |
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||||||||||||| ||||||||||||||| |||| |||||||||| ||| | ||||| | |||||| |||||||| ||||||| |||||| |
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| T |
20093975 |
aaacaaaggagaaggaattagtttctcagaagaaacacctcttaaatggatgaaggttctacagaaatgaaagaaacctccttgttctgagt |
20093884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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